Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tfu_2653 |
Symbol | |
ID | 3581469 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermobifida fusca YX |
Kingdom | Bacteria |
Replicon accession | NC_007333 |
Strand | - |
Start bp | 3116804 |
End bp | 3120679 |
Gene Length | 3876 bp |
Protein Length | 1291 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637686372 |
Product | DNA-directed RNA polymerase subunit beta' |
Protein accession | YP_290709 |
Protein GI | 72163052 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.229065 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGCTCGACG TCAACTTCTT CGACGAGCTC CGGATTGGTC TCGCGACCGC TGACGACATC CGTCAGTGGT CGCACGGCGA GGTCAAAAAG CCGGAAACCA TCAACTACCG GACCCTCAAG CCCGAAAAGG ACGGACTCTT CTGCGAGAAG ATCTTCGGTC CGACCCGGGA CTGGGAGTGC TACTGCGGTA AGTACAAGCG GGTCCGCTTC AAGGGCATCA TTTGCGAACG CTGCGGTGTC GAGGTCACGC GGGCCAAGGT GCGGCGGGAA CGCATGGGCC ACATCGAGCT GGCCGCTCCC GTCACCCACA TCTGGTACTT CAAGGGCGTG CCCAGCCGCC TGGGCTACCT CCTCGACCTC GCACCCAAGG ACCTGGAGAA GGTCATCTAC TTCGCGGCCT ACATGGTCAC CTGGGTGGAC ACCGAGGCCC GCGAGCGCGA CCTGCCGTCC CTGGAAGCCC AGATCTCCGT CGAGCGGCAG CACCTCGAGC AGCGCCGCGA CTCCGCGATC GAGGAGCGCC ACCGCAAGCT CGAAGCCGAC CTGGCCGAAC TGGAGGAACA GGGCGCCAAG GCGGATGCCC GCCGCAAGGT GCGCGAGGCC GCCGAGCGGG AGATCCGGCA GATCCGCGAC CGCGCCCAGC GGGAGATCGA CCGCCTCGAA GAGGTCTGGA ACCGCTTCAA GAACCTCAAG GTCCAGGACC TCGAAGGCGA TGAGCAGCTC TACCGCGAAA TGCGGGACCG CTTCGGCAAG TACTTCCGCG GCGGTATGGG CGCCCAGGCG ATCAAGGAGC GGCTGGCCAA CTTCGACCTG GAGGCCGAAG CCGAGAAGCT CCGCGAGATC ATCCGCACGG GCAAGGGCCA GAAGAAGGCC CGCGCCCTCA AGCGGCTCAA GGTCGTCTCG GCGTTCCTCA ACACCCGCAA CAGCCCGATG GGCATGGTGC TGGACTGCGT CCCGGTGATC CCGCCGGACC TGCGTCCCAT GGTTCAGCTC GACGGTGGCC GCTTCGCCAC CTCCGACCTG AACGACCTGT ACCGTCGGGT CATCAACCGC AACAACCGGC TCAAGCGGCT TCTCGACCTC GGCGCGCCCG AGATCATCGT CAACAACGAG AAGCGCATGC TCCAGGAGGC CGTTGACGCG CTGTTCGACA ACGGCCGCCG CGGCCGCCCC GTCACCGGTC CGGGCAACCG TCCGCTCAAG TCCCTGTCCG ACATGCTCAA GGGCAAGCAG GGACGGTTCC GCCAGAACCT GCTGGGTAAG CGCGTCGACT ACTCTGGCCG CTCGGTCATC GTGGTCGGCC CGCAGCTCAA GCTGCACCAG TGCGGCCTGC CCAAGCAGAT GGCGCTGGAG CTGTTCAAGC CGTTCGTGAT GAAGCGCCTG GTCGACCTGA ACCATGCGCA GAACATCAAG AGCGCCAAAC GCATGGTGGA GCGGGCCCGG CCCGTGGTGT GGGACGTGCT GGAGGAAGTC ATCTCCGAGC ACCCCGTCCT GCTCAACCGG GCGCCGACCC TGCACCGCCT GGGCATCCAG GCGTTCGAAC CGCAGTTGGT CGAGGGCAAG GCCATCCAGA TCCACCCGCT CGTCTGCACC GCGTTCAACG CGGACTTCGA CGGCGACCAG ATGGCGGTCC ACCTGCCGCT GTCGGCGGAG GCCCAGGCCG AGGCGCGCAT CCTGATGCTC GCCACGAACA ACATCCTCAA GCCCTCCGAC GGCAAGCCGG TCACCATGCC CACCCAGGAC ATGGTCATCG GCCTGTACTA CCTGACCACC ATGAAGGAGG GTGCGAAGGG AGAAGGCCGG GCGTTCAGCA ACATCGGCGA GGCCATCATG GCCTACGACC TCGGCGAACT CGACCTGCAA GCGAAGATCA AACTGCGGGT CGAGGGCGAC ACGGTGCCGC CGGTGAACTG GGAGCCGCCC GAGGACTACC AGCCGGGCCA GCCGTACATC CTGGAGACCA CCCTCGGCCG GTACCTGTTC AACGAGACCA CGCCCGAGGA CTACCCGTTC GTCAACCAGC AGATGGGCAA GAAGCAGTTG TCCGCGCTGG TGACCGAACT GGCGGAGAAG TACTCGAAGG TCCAGGTGGC TACCACCCTG GACGCCCTCA AGGACGCCGG ATACTACTGG GCGACCCGTT CGGGGCTGAC CATCAGCATC AGCGATGTGA TCCCGCCGCC GAACAAGCAG CAGATCCTCG ACAAGTACGA GCAGCAGGCC CAGAAGATCC AGCGCCAGTA CGAGCGTGGT CTGATCAGCG ACGACGAACG CCGCCAGGAG CTGATCCACA TCTGGACCAA GGCCACGGAC GAAGTGGCCA AGGACATGGA GGAGAACTCG CCTCCGGACA ACCCGGTCTG GATGATGGTC AACTCCGGAT CCCGCGGTAA CCCGCTGCAG GTCCGGCAGA TCGCCGCTAT CCGCGGCCTG GTCTCCAACA CCAAGGGTGA GACGATTCCG CGGCCGATCA AGTCCTCGTA CCGCGAGGGC CTAACGGTGC TGGAGTACTT CATCTCCACC CACGGCCAGC GGAAGGGTCT GGCGGACACC GCGCTGCGTA CCGCCGACTC CGGATACCTC ACCCGTCGTC TCGTGGACGT CGCCCAGGAC GTCATCGTCC GCGAGGTCGA CTGCGGCACT GACCGTTTCC TGTGGCAGGA GATCGGCGAA CGGCGCCCCG ACGGCACGAT TGTGCGCAAG CACAACGTCG AGAACACCGG TTTCGGCCGG ACTCTCGCCG AAGACGTGGT GGTCGACGGC AAGGTCATCG CGACCAAGCT GAGCGACACT ACCGAGGCGC TGATCGACAA GCTGCTCGCC GCCGGGGTCA CCCGGATCCG CATCCGCAGC GCACTGGTGT GCGAGTCCAA GATCGGGGTG TGCGCCACCT GCTACGGCCG CTCCCTGGCC ACAGGCAAGC CGGTCGACGT CGGTGAGGCT GTCGGTATCA TCGCCGCCCA GTCCATTGGT GAGCCCGGTA CCCAGCTGAC CATGCGTACC TTCCACATGG GTGGTACGGC GGGTCAGGAC ATCACCCACG GTCTGCCCCG TGTCCAGGAG CTGTTCGAGG CCCGCGTCCC CAAGGGCGTG GCCCCGATCA GCGAAGTGGA GGGCCGGGTC CGGATTGAGG AGACCGACAA GAGCCGTAAG ATCATTGTCG TCCCGGACGA CGGCTCCGAC GAGGTCAGCT ACCAGGTGCC CATGCGGGCT CCGCTGCTTG TCCAAGACGG GCAGCGCGTC GAAGTCGGTC AGCAGCTCGT CCAGGGTACG GTCAACCCGC ACGAGATCCT GCGGATCCTC GGCCCGCGCG CGGTGCAACA GCACCTCGTC TCCGAGGTCC AGGAGGTCTA CAAGTCGCAG GGTGTCTCGA TCCACGACAA GCACATCGAG ATCATCGTGC GGCAGATGCT CAAGCGGGTG AACGTCCTCG AGTCCGGTGA CACTAAGCTG CTGCCGGGCG AAATGATCGA ACGTCCCAAG TTCGAGGAGA TCAACCGCCG CGTCGTGGCC GAAGGCGGCC AACCCGCTTC GGCTCGTCCC GTCCTCCTCG GCATCACGAA GGCGTCGTTG GCCACAGAAT CGTGGCTCTC CGCGGCCTCC TTCCAGGAGA CCACCCGGGT GCTCACCGAG AACGCCATTC ACGGTAAGAG CGACCCGCTG CTCGGTCTCA AGGAGAACGT CATCATCGGT AAGCTCATCC CGGCCGGTAC CGGTATGCCG CAGTACCGGA ACATCCGGGT TGAGCCCACT GAGGAGGCCA AGGCCTCGAT GTACTCGGTT TCCTCCTACG AGGAGCCCAG TGAGTACACC TTCGGCCAGG GATCCGGTGA GGCCGTTCCG CTGGAGGACT ACGATTTCGG GTCCTACAAC AGGTAA
|
Protein sequence | MLDVNFFDEL RIGLATADDI RQWSHGEVKK PETINYRTLK PEKDGLFCEK IFGPTRDWEC YCGKYKRVRF KGIICERCGV EVTRAKVRRE RMGHIELAAP VTHIWYFKGV PSRLGYLLDL APKDLEKVIY FAAYMVTWVD TEARERDLPS LEAQISVERQ HLEQRRDSAI EERHRKLEAD LAELEEQGAK ADARRKVREA AEREIRQIRD RAQREIDRLE EVWNRFKNLK VQDLEGDEQL YREMRDRFGK YFRGGMGAQA IKERLANFDL EAEAEKLREI IRTGKGQKKA RALKRLKVVS AFLNTRNSPM GMVLDCVPVI PPDLRPMVQL DGGRFATSDL NDLYRRVINR NNRLKRLLDL GAPEIIVNNE KRMLQEAVDA LFDNGRRGRP VTGPGNRPLK SLSDMLKGKQ GRFRQNLLGK RVDYSGRSVI VVGPQLKLHQ CGLPKQMALE LFKPFVMKRL VDLNHAQNIK SAKRMVERAR PVVWDVLEEV ISEHPVLLNR APTLHRLGIQ AFEPQLVEGK AIQIHPLVCT AFNADFDGDQ MAVHLPLSAE AQAEARILML ATNNILKPSD GKPVTMPTQD MVIGLYYLTT MKEGAKGEGR AFSNIGEAIM AYDLGELDLQ AKIKLRVEGD TVPPVNWEPP EDYQPGQPYI LETTLGRYLF NETTPEDYPF VNQQMGKKQL SALVTELAEK YSKVQVATTL DALKDAGYYW ATRSGLTISI SDVIPPPNKQ QILDKYEQQA QKIQRQYERG LISDDERRQE LIHIWTKATD EVAKDMEENS PPDNPVWMMV NSGSRGNPLQ VRQIAAIRGL VSNTKGETIP RPIKSSYREG LTVLEYFIST HGQRKGLADT ALRTADSGYL TRRLVDVAQD VIVREVDCGT DRFLWQEIGE RRPDGTIVRK HNVENTGFGR TLAEDVVVDG KVIATKLSDT TEALIDKLLA AGVTRIRIRS ALVCESKIGV CATCYGRSLA TGKPVDVGEA VGIIAAQSIG EPGTQLTMRT FHMGGTAGQD ITHGLPRVQE LFEARVPKGV APISEVEGRV RIEETDKSRK IIVVPDDGSD EVSYQVPMRA PLLVQDGQRV EVGQQLVQGT VNPHEILRIL GPRAVQQHLV SEVQEVYKSQ GVSIHDKHIE IIVRQMLKRV NVLESGDTKL LPGEMIERPK FEEINRRVVA EGGQPASARP VLLGITKASL ATESWLSAAS FQETTRVLTE NAIHGKSDPL LGLKENVIIG KLIPAGTGMP QYRNIRVEPT EEAKASMYSV SSYEEPSEYT FGQGSGEAVP LEDYDFGSYN R
|
| |