Gene Tfu_2421 details

Gene Information

• Locus tag: Tfu_2421
• Symbol: rho
• ID: 3580260
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermobifida fusca YX
• Kingdom: Bacteria
• Replicon accession: NC_007333
• Strand: -
• Start bp: 2840551
• End bp: 2842485
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 637686136
• Product: transcription termination factor Rho
• Protein accession: YP_290477
• Protein GI: 72162820
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCGACA CCACCGAACT CCACCAGGAC GCGGCGGTCG GTACGCAGGA CACGACCTCG 
TCCAAAGTGG ACGTCGGCGA CGCCGCGCCC CCCGCTGGCA AGAGCGCGTC AACGCGGTCC 
CGTAGCCGCT CCGGAGGTAC CGGGCTGGCC GCGCTGAAGC TCACGGAGCT GCAGCGTCTG 
GCGTCCGACC TCGGAATCAC GGGCACCGGC CGGATGCGCA AGAGCGAGAT CATCGCTGCG 
ATCGAAGCCA AGCAGGGTGG GCCGGTCAGC GCGCCCGAGA CCACAACGGC GAAGACCGCC 
GAAACCGCGA GCACCACAGC CGCGAAAAAG AAGGAGTCCG CCGCCACGAC TGAGGATCCC 
GCCACCGAAC CGGCGGCAGA AAAGGCGGAC AAGACCACCG AGAAAACTGC AACAGAGTCG 
GCTGAAAAGC CGGAACGGAC CCGTCGCCGT TCCCGCCGCC GCAGCGGTGA AGAAACCGCG 
GAGACCCCGG CGGCCGAGAG CAGCGACACC ACTGAGAGCG CCAAGGAGGA CGCCACGGCG 
TCGGCTCCCG CAGAAACTGA GAAGACCACA ACCGCACAGC CCGCCCAGAA CGGCCAGAAC 
GGCACCAGGG AGCGGCGCCG TCGCAGCCGT AACCGCGACG GAGGCAGCGA CCAGCAGGCC 
TCCCAGCAGC AGAACGGCAC CAAGAGCGAC AGCGACGACG AGGAGTACAG CGGAGGGTCC 
CGCCGCCGGG GACGCCGCCG TGACCGCCGT GACCGCCGCA ACCGGGAGCG TGCTGACCAA 
GAGCCGGTGA TCAGCGAGGA CGACGTCCTC CTGCCGGTCG CGGGCATCCT GGACATCCTC 
GACAACTACG CGTTCGTGCG GACCACCGGC TACCTGCCCG GTCCCAACGA CGTCTACGTT 
TCGCTGGCCC AGGTCCGCAA GTACGGCCTG CGCAAGGGTG ACGCCATCAC CGGAGCGGTG 
CGCCAGCCGC GCGAAGGCGA GCGTCGGGAG AAGTTCAACG CGCTGGTCCG GCTGGACAGC 
GTGAACGGCA TGCCGCCCGA GCGGGCGCGC AACCGGCCCG AGTTCTCCAA GCTGGTCCCG 
CTGTACCCGC AGGAGCGGCT GCGCCTCGAA ACCGAGCCGC ACATCCTCAC CACGCGGATC 
ATCGACCTCA TCTCGCCCAT CGGCAAGGGG CAGCGCGGCC TCATCGTCTC CCCGCCCAAG 
GCGGGTAAGA CGACGGTGCT GCAGGCGATC GCCAACGCGA TCACCCAGAA CAACCCCGAG 
TGCCACCTCA TGGTCGTCCT CGTCGACGAG CGGCCTGAGG AGGTCACCGA CATGCAGCGC 
ACGGTCAAGG GCGAGGTCAT CCACTCGACC TTCGACCGTC CCGCCGAAGA CCACACGACC 
GTTGCCGAGC TCGCTATCGA ACGGGCGAAG CGTCTGGTCG AAATGGGACT GGACGTCGTG 
GTGCTGCTCG ACTCCATCAC CCGGCTGGGA CGCGCCTACA ACCTCTCCGC ACCGGCGAGC 
GGGCGCATCC TGTCCGGTGG TGTCGACTCC ACCGCGCTCT ACCCGCCGAA GCGGTTCTTC 
GGCGCCGCCC GCAACATCGA GAACGGCGGC TCCTTGACGA TCCTGGCTAC CGCGCTGGTC 
GAGACCGGTT CGCGGATGGA CGAGGTGATC TTCGAGGAGT TCAAGGGCAC CGGCAACATG 
GAGCTCAAGC TCAGCCGGAG CCTCGCCGAC AAGCGGCTCT TCCCCGCGGT GGACATCGAA 
GCGTCCAGCA CGCGCAAGGA GGAGATCCTG CTGTCGCCCG AGGAGCTCAA CATCATCTGG 
AAGCTCCGCC GGGTGCTGCA CGCCCTGGAC ACGCAGCAGG CGTTGGAACT GGTCCTGAGT 
AAACTCAAGA AGACCAAGAG CAACGCTGAA TTCCTGTTGC AGGTCCAGAA GACCACGATC 
GGGCCGAACG ACTAG 

 

Protein sequence

MSDTTELHQD AAVGTQDTTS SKVDVGDAAP PAGKSASTRS RSRSGGTGLA ALKLTELQRL 
ASDLGITGTG RMRKSEIIAA IEAKQGGPVS APETTTAKTA ETASTTAAKK KESAATTEDP 
ATEPAAEKAD KTTEKTATES AEKPERTRRR SRRRSGEETA ETPAAESSDT TESAKEDATA 
SAPAETEKTT TAQPAQNGQN GTRERRRRSR NRDGGSDQQA SQQQNGTKSD SDDEEYSGGS 
RRRGRRRDRR DRRNRERADQ EPVISEDDVL LPVAGILDIL DNYAFVRTTG YLPGPNDVYV 
SLAQVRKYGL RKGDAITGAV RQPREGERRE KFNALVRLDS VNGMPPERAR NRPEFSKLVP 
LYPQERLRLE TEPHILTTRI IDLISPIGKG QRGLIVSPPK AGKTTVLQAI ANAITQNNPE 
CHLMVVLVDE RPEEVTDMQR TVKGEVIHST FDRPAEDHTT VAELAIERAK RLVEMGLDVV 
VLLDSITRLG RAYNLSAPAS GRILSGGVDS TALYPPKRFF GAARNIENGG SLTILATALV 
ETGSRMDEVI FEEFKGTGNM ELKLSRSLAD KRLFPAVDIE ASSTRKEEIL LSPEELNIIW 
KLRRVLHALD TQQALELVLS KLKKTKSNAE FLLQVQKTTI GPND