| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_2139 |
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| Symbol | |
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| ID | 3581982 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermobifida fusca YX |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007333 |
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| Strand | - |
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| Start bp | 2503545 |
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| End bp | 2505395 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637685842 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_290195 |
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| Protein GI | 72162538 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGTCGAA ACGCTAGAGA AGGCACAGCG GCCCAGTACT ACGGTGGGCC TCCCGCGAGT
GGGGGAATCG GGACCGAGCC GGGAGCTGGA CACCGTCCCC CCGACTCACC GGATCGTCGA
GTCCAACAGT CTCGCCACAC GTCCGTTCGA GAGGTGTTTG TGTCACCTGC CAGTTCGACC
CGCTCTAAGC AGCAGCCGGA GGCGCTGCAA GAGCCAGTCA TCCAGCAGCT GATCGAGCGT
GGGCGGTCCC AGGGGTACCT TGAGCCCGAG GACGTGCGCC GTGCCTTTGA AGAGGCCGAG
ATCCCGATGT CGCAGGCTCA GGCTGTGCTC CGCACCCTGA CCAAAGAAGG CGTCACCCTC
ATCGTGAACG CGGCTGAGTC CGCACCGCCT CGACGCAAGT CCACCCGGCG TAAGACAACC
TCCGCCTCTC GGGCGGCGGC TCAAACCAGC ACCACTCGGG CCAAACGCAC GGCGGCAGCC
CAAGAGAAGC CCGAGGCCGC GACTGCCGTG AAGAAGAGCA CGGAAGACGC GGAGGAGACC
ACCACAGCGT CCAAGAAACG CACGACCAAG GCCGCCAGCA CGAAATCCAA GACGACCGCC
AAGCGCAGCA CGGCCAAGAA GACCACGACC AAGTCGACCA CGAAGAAGAC CGCCAAGACC
GCGACCAAGA AGAAGACGGC TGCGACAGCG GCCACCCCCG CGGTCGAAGA GGAGCTCGGC
TTGGAGGCGA CCGACCTCCT CGAGGACAAC TTCGAGGAGA CCGGCGCCGA CCTGGAACTG
GTGGACGACA CCGACGACGA GGTCGTCGAG CTTGAGGAGA CCACTCCGGC GAAGCGGAGC
CGGGACCTCC CCGAGAAAGC GGACGCCGAC GACGATGACT CCTTCGTCCT CTACGACGAC
GACGATGACG CGCCGGCAGC GCAGGTCGTC GCGGCGGGAG CAACCGCTGA CCCGGTGAAG
GACTACCTCA AGCAGATCGG CAAGGTTCCC CTCCTCAACG CGGAGCAGGA GGTGGAGCTC
GCCAAGCGGA TCGAGGCCGG TCTGTTCGCT GAGGAGAAGC TCTCCAAGAA GGGCCACGAG
CTCACCCCGG AGGAACGGGA GGAGCTGGAG TGGATCGCTG AAGACGGCAA GCGCGCCAAG
AAGCACCTGC TGGAGGCGAA CCTGCGCCTG GTGGTGTCCT TGGCCAAGCG CTACACCGGC
CGCGGCATGC TCTTCCTCGA CCTGATCCAG GAAGGCAACC TCGGCCTCAT CCGGGCGGTC
GAGAAGTTCG ACTACACCAA GGGCTACAAG TTCTCCACCT ACGCAACCTG GTGGATCCGG
CAGGCCATTA CCCGCGCGAT GGCCGACCAG GCCCGGACGA TCCGTATCCC GGTGCACATG
GTGGAGGTCA TCAACAAGCT TGCCCGGGTC CAGCGCCAGA TGCTGCAGGA CCTGGGACGC
GAACCGACTC CGGAGGAGCT CGCCAAGGAG CTCGACATGA CCCCGGAGAA AGTTGTCGAA
GTCCAGAAGT ACGGGCGCGA GCCGATTTCC TTGCACACCC CGCTCGGCGA GGACGGCGAC
AGCGAGTTCG GCGACCTGAT CGAGGACTCC GAGGCGATCC AGCCGGGCGA GGCGGTCAGC
TTCACCCTGC TGCAGGAGCA GCTGCACTCG GTGCTCGACA CCCTGTCCGA GCGGGAAGCA
GGCGTGGTGT CGATGCGCTT CGGGCTCACC GACGGCCAGC CCAAGACTTT GGACGAGATC
GGCAAGGTCT ACGGCGTGAC CCGGGAGCGG ATCCGCCAGA TCGAGTCCAA GACCATGTCC
AAGCTGCGCC ACCCGTCCCG TTCCCAGGTG CTGCGCGACT ACTTGGACTA A
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| Protein sequence | MCRNAREGTA AQYYGGPPAS GGIGTEPGAG HRPPDSPDRR VQQSRHTSVR EVFVSPASST
RSKQQPEALQ EPVIQQLIER GRSQGYLEPE DVRRAFEEAE IPMSQAQAVL RTLTKEGVTL
IVNAAESAPP RRKSTRRKTT SASRAAAQTS TTRAKRTAAA QEKPEAATAV KKSTEDAEET
TTASKKRTTK AASTKSKTTA KRSTAKKTTT KSTTKKTAKT ATKKKTAATA ATPAVEEELG
LEATDLLEDN FEETGADLEL VDDTDDEVVE LEETTPAKRS RDLPEKADAD DDDSFVLYDD
DDDAPAAQVV AAGATADPVK DYLKQIGKVP LLNAEQEVEL AKRIEAGLFA EEKLSKKGHE
LTPEEREELE WIAEDGKRAK KHLLEANLRL VVSLAKRYTG RGMLFLDLIQ EGNLGLIRAV
EKFDYTKGYK FSTYATWWIR QAITRAMADQ ARTIRIPVHM VEVINKLARV QRQMLQDLGR
EPTPEELAKE LDMTPEKVVE VQKYGREPIS LHTPLGEDGD SEFGDLIEDS EAIQPGEAVS
FTLLQEQLHS VLDTLSEREA GVVSMRFGLT DGQPKTLDEI GKVYGVTRER IRQIESKTMS
KLRHPSRSQV LRDYLD
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