Gene Tfu_2009 details

Gene Information

• Locus tag: Tfu_2009
• ID: 3580882
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermobifida fusca YX
• Kingdom: Bacteria
• Replicon accession: NC_007333
• Strand: -
• Start bp: 2347443
• End bp: 2349452
• Gene Length: 2010 bp
• Protein Length: 669 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 637685702
• Product: cellulose-binding family II protein
• Protein accession: YP_290065
• Protein GI: 72162408
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG5297] Cellobiohydrolase A (1,4-beta-cellobiosidase A)

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 0.872108
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCGAGAGT ATCCCCCCAC GCGGCGCCGA CCGGTGCGCT TCGGCGCGGC CCTTGCCGCA 
TTCGTGCTCG GTGCCACCGG TGCTGCGGCT CTCCCCAGCC CAGCCCACGC CGCCGCCGGA 
TGCAGCGTCG ACTACAGCGT CAACCAGTGG AACGACGGTT TCACTGGAAC CGTCACCGTC 
ACCAACCTGG GCGACCCCGT CAACGGCTGG ACCCTCAGTT GGCGCTTCCC TTCCGGGGAG 
CGGATCACCC ACGGGTGGAA CGCTGAGTTC CAGACCAACG GCGCCGAGGT CACCGCCGCC 
AACACTCCCT GGAACGCCAG CGTCCCCACG GGCGGCACCG TCAGTTTTGG CTTCAACGCC 
ACCCACAACG GCACGGTCGG CATCCCCGAG TCCTTCACCT TCAACGGCAC CGTATGCACT 
GACCAGCCCA CGCCGGGCGG GCCAGAAGAA CCCGGCGGCC CCGAGGAGCC CGGCGGGCCT 
GAAGAACCAG GCGAACCCGA AGAACCCGCC CTCCCCGAAC CCACCGGAGC CCGCCAAGCG 
GAACGGCTCG ACCGCGGACT GATCAGCGTG CGCAGCGGCA ACGGGAACCT GGTGAGCTGG 
CGGCTGCTCG GCTCGGACCC CCGCGACATC GCGTTCAACG TCTACCGCGG ATCCACCCGC 
GTCAACTCCA CCCCCCTCAC CTCCGCCACC TCCTACCTTG ACGCCGGCGC CCCAGCCGAC 
GCCTCCTACA CAGTGCGGCC GGTCGTCGAC GGCGTGGAAC TGGGCCCCTC CGCAGCCTCC 
CTCAACTTCA CCAACGGCTA CCTGGACGTG CCGTTGCAGC GTCCCGCGGG CGGCACCGTC 
CACGGCTCCT CCTACACCTA TGAGGCCAAC GACGCCAGCG TCGGCGACCT CGACGGCGAC 
GGCCGCTACG AGATCGTCCT GAAGTGGGAG CCCACCAACG CCAAGGACAA CTCCCAGTCC 
GGCTACACCG GGCCGGTCCT CATCGACGCC TACGAACTCG ACGGCACCCT CCTGTGGCGG 
ATCAACCTGG GCATCAACAT CCGCGCCGGG GCCCACTACA CCCAGTTCCA GGTCTATGAC 
TACGACGGCG ACGGGCGCGC CGAAGTCGCC ATGAAAACCG CTGACGGGAC CCGCGACGGC 
ACCGGGGCGG TGATCGGCTC CGCCAACGCC GACTACCGCA ACTCCTCCGG ATACGTCCTG 
TCCGGACCGG AATACCTCAC CGTCTTCGAC GGGCGCACCG GCCGGGCCCT GGACACAGTG 
GACTACGTGC CGCCCCGCGG CAACGTGTCC TCGTGGGGCG ACTCCTACGG CAACCGGGTG 
GACCGCTTCC TCGCCGGCAC CGCCTACCTG GACGGGAAAC GGCCCAGCAT GATCTTCTCC 
CGCGGCTACT ACACCCGAAC CGTCATCACA GCGTGGGACT TCCGCGACGG ACGACTCACC 
CGCCGGTGGA CCTTCGACAC CAACAGCTCC ACCAACACCG GACGCGGCTA CGAAGGCCAA 
GGGTTCCACT CCCTGTCCAT CGCGGACGCC GACGGCGACG GCCGTGACGA GATCATGTTC 
GGCGCCATGG CCGTCGACGA TGACGGGCGC GGCATGTGGA CCACCGGATA CGGCCACGGC 
GACGCCCTGC ACGTCGGCGA CTTCGTCCCC GCCCGGCCCG GACTCGAGGT GTACGGGGTT 
TCCGAAAGCT CCTCGCAGCC CAACGCTTGG CTCGCCGACG CGCGCACAGG AAGCACCCTG 
TGGCGCACCG CCTCCGGCGA CGACAACGGG CGCGGCGTCG CCGGAGATAT CTGGGCAGGC 
AGCCCCGGCG CCGAATTCTG GTCCTCACGG GTGGACGGCC TACTCAACAC CTCCGGAACC 
GCCATCGGCC GCAAACCCAG CTCGATCAAC TTCCTCGTCT GGTGGGACGG AGACCCCAGC 
CGGGAACTGC TGGACCAGAC CCGGATCGAC AAGTACGGTC CGAACGGCGA CACGCGAGGA 
GCGCGTCCGC GCTCAACTCC ACTCCTTTAG 

 

Protein sequence

MREYPPTRRR PVRFGAALAA FVLGATGAAA LPSPAHAAAG CSVDYSVNQW NDGFTGTVTV 
TNLGDPVNGW TLSWRFPSGE RITHGWNAEF QTNGAEVTAA NTPWNASVPT GGTVSFGFNA 
THNGTVGIPE SFTFNGTVCT DQPTPGGPEE PGGPEEPGGP EEPGEPEEPA LPEPTGARQA 
ERLDRGLISV RSGNGNLVSW RLLGSDPRDI AFNVYRGSTR VNSTPLTSAT SYLDAGAPAD 
ASYTVRPVVD GVELGPSAAS LNFTNGYLDV PLQRPAGGTV HGSSYTYEAN DASVGDLDGD 
GRYEIVLKWE PTNAKDNSQS GYTGPVLIDA YELDGTLLWR INLGINIRAG AHYTQFQVYD 
YDGDGRAEVA MKTADGTRDG TGAVIGSANA DYRNSSGYVL SGPEYLTVFD GRTGRALDTV 
DYVPPRGNVS SWGDSYGNRV DRFLAGTAYL DGKRPSMIFS RGYYTRTVIT AWDFRDGRLT 
RRWTFDTNSS TNTGRGYEGQ GFHSLSIADA DGDGRDEIMF GAMAVDDDGR GMWTTGYGHG 
DALHVGDFVP ARPGLEVYGV SESSSQPNAW LADARTGSTL WRTASGDDNG RGVAGDIWAG 
SPGAEFWSSR VDGLLNTSGT AIGRKPSSIN FLVWWDGDPS RELLDQTRID KYGPNGDTRG 
ARPRSTPLL