Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tfu_1616 |
Symbol | |
ID | 3581103 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermobifida fusca YX |
Kingdom | Bacteria |
Replicon accession | NC_007333 |
Strand | - |
Start bp | 1873997 |
End bp | 1875649 |
Gene Length | 1653 bp |
Protein Length | 550 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637685310 |
Product | alpha-L-arabinofuranosidase |
Protein accession | YP_289674 |
Protein GI | 72162017 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3507] Beta-xylosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.347525 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGTCTC CCCAAGTCAC GTCCTCCCCG TCTCGTGAGG AACCGAGGGC GGGCACGATT CGCAACCCGG TACTCACCGG CTTCTACCCC GACCCTTCCA TCCTGCGAGT GGGCGACGAC TACTACATGG CGACCTCCAC ATTCGAGTGG TATCCCGGAG TGACCCTGCA CCATTCCCGG GACTTGGTGC ACTGGCGCCC CCTGGGCGGT GCACTCACCG AGACTCGACT GCTGGACCTG GCTGGACGGC GGGACGGCGC AGGGGTGTGG GCACCCGCCC TGTCCTACCG GGACGGACTG TTCTTCCTCG TCTTCACGAA CGTCGCAAGC TACAGCGGCA ACTTCTGGGA CGCGCCCAAC TACGTCACCA CCGCTCCCGA CATCACCGGC CCCTGGTCCG ACCCGGTGCC GCTCCACTCC CTCGGCTTCG ACCCGTCGCT GTTCCACGAC GACGACGGAC GGAGCTGGCT GCTCAGCACC TCCATGGACT GGCGGCCGGG ACGGGACGCG TTCGGTGGCA TCGTCGCCCA AGAGTTCTCG GTGCGCGACA TGAAACTCGT CGGTGAACCG GTGATCATCT TCACCGGCAC CGAAGCCGGC GTGACCGAGG CGCCCCACAT CTACAAGCGC GACGGCTGGT ACTACCTGGT CACCGCCGAA GGCGGCACCC AGTGGGAGCA CCAGGTCACC GTGGCCCGCT CCCGCTCGGT CACCGGACCC TACGAGGTCG ACCCGGCCGG GCCAGCCCTC ACCTCGCGGC ACGTTCCCGA AGCGCCGCTG CAGAAGGCCG GGCACGCGAG CATGGTCGAA ACCCAGCACG GCGAATGGTA TTTCGCGCAC CTGACCGGAC GCCCGATGCC GCCCAGCGGC CGGTGCGTCC TCGGTCGGGA GACCGCGTTG CAGAAGATCG AATGGTCTTC AGACGGGTGG CCCCGCGTCC GCAACGCGGA ACCGCTGCTG GAAGTGCCGG GACCGCGCGG CCTGGCCCCG CACCCGTGGC CGCAGCCGTC GGAGACCGAC CACTTCGACG ACCCCACGCC GCGGCCCGAG TGGAGCACGC TGCGCCGGCC CTTCGACTCC TCCTGGGTCT CCCTCACCGA ACGGCCCGGC TACCTGCGGA TCCGCGGCGG GCAGTCGCCT GCTGGCCTGC ACGAGCCCAG CCTGGTGGCA CGCCGACTGC AGCACCGCGC CTGCATCTTC GAAGCCTGCC TGGAGTTCAA GCCGGAAGAC TTCCGGCAGA TGGCAGGCAT CACCGCCTAC TACAACACCC GCCAATGGCA CTACCTGCGG ATCAACCGCG ACGACCGGGG CGGCGTGTTC GCGGGCGTGC TCACCAGCGA CCGCGGCATC ATCCGCGAAG TGGGACGGCG GATCAGCGTC ACCGACTGGC CGAAGGTCTT CCTGCGCGCC GAAATCGACC GGAACGACCT GCGCTTCGCC GTCTCCTCCG ACGGCAGCAC GTGGGCTGAC ATGGGGGTGC GTCTGGACAT GAGCATCCTG TCCGACGAGT ACGCCGAGGA ACGGTTCGGC AACGACCCCA TCATGTGGGG TTTCACGGGG GCGTTCCTCG GCCTGTGGGC CCACGACATG ACCGGGGCAG GGCTCCCTGC CGACTTCGAC TTCTGCACCT ACCGGCCTCA GTCCCCCTCC TGA
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Protein sequence | MTSPQVTSSP SREEPRAGTI RNPVLTGFYP DPSILRVGDD YYMATSTFEW YPGVTLHHSR DLVHWRPLGG ALTETRLLDL AGRRDGAGVW APALSYRDGL FFLVFTNVAS YSGNFWDAPN YVTTAPDITG PWSDPVPLHS LGFDPSLFHD DDGRSWLLST SMDWRPGRDA FGGIVAQEFS VRDMKLVGEP VIIFTGTEAG VTEAPHIYKR DGWYYLVTAE GGTQWEHQVT VARSRSVTGP YEVDPAGPAL TSRHVPEAPL QKAGHASMVE TQHGEWYFAH LTGRPMPPSG RCVLGRETAL QKIEWSSDGW PRVRNAEPLL EVPGPRGLAP HPWPQPSETD HFDDPTPRPE WSTLRRPFDS SWVSLTERPG YLRIRGGQSP AGLHEPSLVA RRLQHRACIF EACLEFKPED FRQMAGITAY YNTRQWHYLR INRDDRGGVF AGVLTSDRGI IREVGRRISV TDWPKVFLRA EIDRNDLRFA VSSDGSTWAD MGVRLDMSIL SDEYAEERFG NDPIMWGFTG AFLGLWAHDM TGAGLPADFD FCTYRPQSPS
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