Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tfu_0579 |
Symbol | |
ID | 3581277 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermobifida fusca YX |
Kingdom | Bacteria |
Replicon accession | NC_007333 |
Strand | - |
Start bp | 659783 |
End bp | 661492 |
Gene Length | 1710 bp |
Protein Length | 569 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637684269 |
Product | signal peptide peptidase A |
Protein accession | YP_288640 |
Protein GI | 72160983 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
TIGRFAM ID | [TIGR00705] signal peptide peptidase SppA, 67K type [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.766562 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGATGCCG CAAAGCTGTT CGACCCTCTG ACCACAATCC GGCGTCGGCG CACTGCCCCG CTGGTCCTGG AATTGGACCT GACGGAGGGG ATGATTGACG AACCGCCGGG TGACCCCCTC AGCCAGATCA TGGCGATGCG GCGGCAACGG CTGTTCGACA TCGTCGAAGG CATTCGGCGC GGGGCCCACG ACCCCCGGGT CAAAGCCTTG ATCGTCAAGA TCGGCTCCCA GTCGCTGGGC ATGGCCCTGG TGCAGGAGCT GCGCCAGGCC GTAGCCATGT TCCGCCGGGC AGGCAAGCAC ACGGTGGCGT GGAGCGAGTC GTTCGGAGAG TTCGGCCCCG GTTCGCTCCC CTACTATCTG GCCACCGCGT TCGACGAGAT CGCGCTGCTG CCTTCCGGTT CGGTGGGGCT GACCGGGCTG CGGGTGGAGA ACCTGTTCTT CGCCGAGGCC CTGGAGAAGC TCGGTGTCGA CTACCAGGGC GGCGCCCGGC ACGAGTACAA GACCGCGCTC AACATGTTCA CGGAGCGCGG TTTCACCGAC GCGCACCGGG AGGCGAGCGG CCGCATCGTG GAATCCCTCA CCGAGCAGTT GGTGGCGGGG ATCAGCAGCG GCCGTGACTT GTCCGAGGAG CGGGTGCGCG AGCTCATCGA CCAGGGGCCG TTCCTCGCCA CCGAGGCGGT GGAAGCGGGC CTCGTCGACA AGGTCGCCTA CCGGGACGAG ATCTACTCCG ACCTGCTGGA CCGCTACTCC GCCGACGGCA CTCCCGCCCA CTTGCAGTAC GTCTCCCGCT ACCAGCGGAC CCGGTCCCTG GCCGACCGCG TGCCGGTCGC GCAGCGCAGC GGATATGTGG CCCTCATCTC CGGGGTGGGG CAGATCGTCA CTGGGCGGAG CCGCCGCTCA CCGCTGGGCG GGGGCGCAGT CATGGGTTCG GACACGGTGG CCGCAGCGTT CCGCGCGGCC CGCAAGGACC CGAACGTCCG CGCCGTAGTG TTCCGGGTGA ACAGCCCGGG CGGCTCCTAC ACCGCGTCCG ATGTGATCTG GCGCGAAGTG GTGCTGACCA GCCAGGCGGG TACCCCGGTC GTGGTGTCGA TGGGCGACGT CGCCGGGTCG GGCGGCTACT TCATTGCCGC GGGTGCTGAC GTCATCATCG CGCAGCCGGG GACGATCACC GGGTCGATCG GTGTGGTGGT CGGCAAGGCC GTGCTGTCGA CCATGCTCGC CAAGCTCGGG GTCACCAGCG ACTGGATCGA CAGTGGCAAC CACGCGGGCA TGTTCAGCCC GAACCGCCCG TTCAGCGAGT CCGAGTGGGA GCGCGTCAAC ACGATGCTCG ACCACATCTA CGACGACTTC GTGGGCAAGG TCGCTGAGGG CCGGAAGATG ACCCGCGACC AGGTCCACGA GGTGGCCAAG GGCCGGATCT GGACTGGTCA GGACGCGTGC GAGCGGGGCC TGGTGGACGA GGTCGGCGGA TTGGAGACCG CGATCCGCAT CGCACGGGAC CGGGGTGGGC TGCCTCCGTC CGCTCCGGTG CGGCACTTCC CCCAGCTGGG TCCGCTCGAG CGTCTGATTC CGGCGGAGTC CAGTGAGGAC CGGACCGCTC AGGCACAGTT GCGGTTGAGC GGGTGGGGGC CGCTGGCGGA ACTGTCGGCA CGTCTGGGCC TGCCGGCGGC GGGGCCGCTG GTGATGCCGG GCACGTGGGA GATCCGGTGA
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Protein sequence | MDAAKLFDPL TTIRRRRTAP LVLELDLTEG MIDEPPGDPL SQIMAMRRQR LFDIVEGIRR GAHDPRVKAL IVKIGSQSLG MALVQELRQA VAMFRRAGKH TVAWSESFGE FGPGSLPYYL ATAFDEIALL PSGSVGLTGL RVENLFFAEA LEKLGVDYQG GARHEYKTAL NMFTERGFTD AHREASGRIV ESLTEQLVAG ISSGRDLSEE RVRELIDQGP FLATEAVEAG LVDKVAYRDE IYSDLLDRYS ADGTPAHLQY VSRYQRTRSL ADRVPVAQRS GYVALISGVG QIVTGRSRRS PLGGGAVMGS DTVAAAFRAA RKDPNVRAVV FRVNSPGGSY TASDVIWREV VLTSQAGTPV VVSMGDVAGS GGYFIAAGAD VIIAQPGTIT GSIGVVVGKA VLSTMLAKLG VTSDWIDSGN HAGMFSPNRP FSESEWERVN TMLDHIYDDF VGKVAEGRKM TRDQVHEVAK GRIWTGQDAC ERGLVDEVGG LETAIRIARD RGGLPPSAPV RHFPQLGPLE RLIPAESSED RTAQAQLRLS GWGPLAELSA RLGLPAAGPL VMPGTWEIR
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