| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0553 |
|---|
| Symbol | |
|---|
| ID | 3580428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 628267 |
|---|
| End bp | 629928 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637684243 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_288614 |
|---|
| Protein GI | 72160957 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.000755623 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCTCCC CCTCGTTCTC CGGGAAACTC ACCGGCCACG GCGGCAACCA CGCCGTGGAG
GTCGCCCGCC ACCACGGCGT AGACACCCTC TTCACGCTCT CCGGCGGGCA CATCTTCCCG
ATCTACGACG GTGCGGTCAA AGCTGACCCT CCGATGCGCC TGCTCGACGT CCGCCACGAG
CAGACCGCGG TCTTCGCGGC CGAAGCCGTC GGCAAACTCA CGCGGCGGGC TGGCTGGGCG
GCCCTCACCG CCGGCCCAGG GGTGACCAAC GGGGTGAGCG GCATAGCCAC CGCGCACTTC
AACGGCTCCC CCCTGGTGGT CGTCGGCGGC CGGGCGCCCG ACAACCGCTG GGGGCAGGGC
CTCCTGCAAG AACTGGACCA GTCCCCGCTG TTCACCACCA TCACCAAACG CGCGTGGACG
GTCCACGACA CCGCCCAGAT CGGCCCCGCG CTCGACGAGG CGTTCACCCT CGCCAACACG
GCGCACCGGG GCCCGGTGTT CCTGGACATC CCGATGGACC GCCTCTACGA CCAGGCCGAG
ATCACCGTCA CCGGACAGGC CGCTGCGGAA GACCGCTCCC CCGACCCTGA CGCGGTGGCC
GCGGTAGCCC GACTGCTCAG CGAAGCAGAA CGGCCGGTCC TGGTGTACGG CTCTGACGTG
TGGCTGGACC ACGCCGAGCA GGCCGCCTTG GAGGCAGCCG AGGAGTTGGG CGTCCCGGTC
GTCACCAACG GCCAGGGCCG CGGTGTGCTC CCCGCCGGCC ACCCGCTGCT GGCCACCCGG
GCCCGCGGGC TCGCCTTGGG CCGCGCTGAC CTGGTCATCG TCGTAGGCAC CCCGCTGGAC
TTCCGGCTCA ACCACGGCCT GTTCGGCGGC CGTGACGGCG CTCCCCTGGC CCGGACCGTG
CACATCACCG ACTCGCCCGC ACAGCTCGCC ACGCACCTCA CTTTGGCGGG AGCGGTCTCC
GGCGACCTGT CGGCCATCCT GCGCGCCCTC GCCGAGCAGG CGAAGCCCAA GCGCGAGGTC
GCCCAGTGGC GGACAGAAGT GGCCGAAGCC GCTGCGGCGA CCGCGGCCAA AGACCGCGAA
GTCCTCGACA GCGACGCCTC CCCGATCCAC CCTGCACGGA TCTACGGGGA GCTCAACCGG
ATCCTCGACG ACGACGCGGT CGTGATCGGC GACGGCGGCG ACTTCGTCTC CTACGCGGGC
AAGTACATCC AGCCGCGCCG CCCCGGCAAC TGGCTGGACC CGGGACCGTT CGGCTGCCTG
GGCACCGGCA TGGGGTATGC GATCGCCGCC CGACTGGTCC GCCCCTCCTC CCAGGTGGTG
GCGCTGTTCG GCGACGGGGC GCTGGGCTTC TCGCTCGCGG ACGTGGACAC TCTCGTCCGG
CACAACCTGC CCGTGGTCAT GGTGTGCGGC AACAACGGCA TCTGGGGCCT GGAGAAAGCG
CCGATGCAAC TGGTCTACGG CTACGACGTG CTCGCCGACC TGGCGCCGCA GACCCGCTAC
GACCAGGTGG TGACCGCGCT GGGCGGCGGC GGGGAGCTCG TCACCGACCC CGCGGAGATC
GGTCCGGCGC TGCGTCGGGC CTTCGACTCC GGCGTGCCCT ATCTCGTCAA CATCGTCACC
GACCCGGAGA ACGTCTACCC GCGCAAGACC ATGGGGGTCT AG
|
|---|
| Protein sequence | MGSPSFSGKL TGHGGNHAVE VARHHGVDTL FTLSGGHIFP IYDGAVKADP PMRLLDVRHE
QTAVFAAEAV GKLTRRAGWA ALTAGPGVTN GVSGIATAHF NGSPLVVVGG RAPDNRWGQG
LLQELDQSPL FTTITKRAWT VHDTAQIGPA LDEAFTLANT AHRGPVFLDI PMDRLYDQAE
ITVTGQAAAE DRSPDPDAVA AVARLLSEAE RPVLVYGSDV WLDHAEQAAL EAAEELGVPV
VTNGQGRGVL PAGHPLLATR ARGLALGRAD LVIVVGTPLD FRLNHGLFGG RDGAPLARTV
HITDSPAQLA THLTLAGAVS GDLSAILRAL AEQAKPKREV AQWRTEVAEA AAATAAKDRE
VLDSDASPIH PARIYGELNR ILDDDAVVIG DGGDFVSYAG KYIQPRRPGN WLDPGPFGCL
GTGMGYAIAA RLVRPSSQVV ALFGDGALGF SLADVDTLVR HNLPVVMVCG NNGIWGLEKA
PMQLVYGYDV LADLAPQTRY DQVVTALGGG GELVTDPAEI GPALRRAFDS GVPYLVNIVT
DPENVYPRKT MGV
|
|---|
| |