| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0304 |
|---|
| Symbol | |
|---|
| ID | 3579977 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 341584 |
|---|
| End bp | 342306 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637683988 |
|---|
| Product | amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_288365 |
|---|
| Protein GI | 72160708 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
[TIGR03004] ectoine/hydroxyectoine ABC transporter, permease protein EhuC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.361382 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGAGTTCC TCATCGACCG GCTCCCGCTC TACCTGAGCG GGGCCGGAAC CACCCTCCTC
ATCACCCTGC TCGGGGCCGT GCTCGCCTTC GCCCTCGCCA TGGTCGTGGG GGTCATGGGC
ACCCTGCGCA ACCCCGTAGC GCGCGCCATC GCCACCGGCT ACACCGAAAC GTTCCGCGGC
GTAGCCGCGC TCGTCCTCAT GTACTGGATG GCGTTCGCGA TCCCCCAGCT CGTCCCCTAC
AAGATCGACG CGCTCTTCGC CGCCGTGCTC GCGCTCGGCC TCAACGTCGG CGCCTACGGG
GCGGAAGTCG TGCGGGCCGC CATCAACGCG GTGCCCAAAG CCCAAGTGGA AGCCACGATC
GCGCTCAGCA TGTCGTGGTG GCGGCGCATG CGAGCGGTCG TGCTGCCCCA AGCGTGGGCG
CAGATGCTGC CCACCTTCGG CAACCTCGTC ATCGAACTGA TGAAAGCCAC CGCCATCGTG
TCGCTCATCG GCGTCAGCGA CCTGACCCGG GTCGCCCAAG AGCAGCGGGC CTCCACCGGG
GAGACGGTCG CGGCCTTCAC CGGCGCCCTC ATCGCCTACT TCCTCATCGC CCAGCTGCTG
ATCGTGGGAA TGCGGCTCCT GGAACGCCGC GCCAACCGGC GGCTGGGACG GCCCGTCGCC
ACCGGCTTCC TCGCCCTGCT GCGGCCCCCG CCCGCGACCG CGACAGGAGG TGGCCGGCGA
TGA
|
|---|
| Protein sequence | MEFLIDRLPL YLSGAGTTLL ITLLGAVLAF ALAMVVGVMG TLRNPVARAI ATGYTETFRG
VAALVLMYWM AFAIPQLVPY KIDALFAAVL ALGLNVGAYG AEVVRAAINA VPKAQVEATI
ALSMSWWRRM RAVVLPQAWA QMLPTFGNLV IELMKATAIV SLIGVSDLTR VAQEQRASTG
ETVAAFTGAL IAYFLIAQLL IVGMRLLERR ANRRLGRPVA TGFLALLRPP PATATGGGRR
|
|---|
| |