| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0136 |
|---|
| Symbol | |
|---|
| ID | 3579022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | - |
|---|
| Start bp | 159987 |
|---|
| End bp | 161285 |
|---|
| Gene Length | 1299 bp |
|---|
| Protein Length | 432 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637683819 |
|---|
| Product | phosphoserine phosphatase |
|---|
| Protein accession | YP_288197 |
|---|
| Protein GI | 72160540 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0560] Phosphoserine phosphatase |
|---|
| TIGRFAM ID | [TIGR00338] phosphoserine phosphatase SerB
[TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.357065 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCCGCCC GGGACTGGGG TGCCCTGGTC TACGCCACTG TGGTCCAGCA GAGTACCTTT
AGAGCCGTCA TGACTCTCGC GAATTCCGTG CCTGAAACCC TGCTGGTGAC GGTCACCGGT
AAAGATCGTC CGGGCATCAG CGCTCGACTG CTGAGCACCT TGTCGGTCTT CCCGGTCACC
ATCACCGACT TGGAGCAGGT TGTCATTGGT GGGCGTCTGC TCCTGGGCGC TTTGCTGTCG
GCCGACGAAC GCGTTGCCCC CGGGGTCCGC AAAGAGCGCC TGTTCGAGGA GATCCGCTCG
GCGGTTTCCA AAGTCGCGGT CGATATGGAC ATGGACGTCG ACTTCATGGT CGACGGCGAG
CGGGTGCGCC CCTGCACGGG GACCCGCCTC GACGTCACGA TCATGGGGGA CCCGCTGCGT
CCAGGCGCGG TCGGCGCCAT CGCTTCCTGT GTGGCACGGG CAGGAGCCAA CATCGACCGT
ATCGAACGCT TGGCCAGCTA CCCGGTGACC GCGCTCTCCC TCTCCTTGAC CGGGGGCAAC
CTGGAACAGC TCCGCACCGA CCTGGCGTTG GAGGCCGCCA CCCAGTCGGT GGACGTGGCC
GTGCAGACGA GCGGCCTCCA CCGGCGGTCC AAGCACCTGG TGGTGATGGA CGTCGACTCC
ACGCTCATCC AGTGCGAGGT CATCGAACTG CTCGCCCAGT ACGCGGGCTG CGGGGACGAG
GTCGCCCGGA TCACCGAGGA GGCGATGCGC GGTGAACTGG ACTTCGAGGA GTCGCTGCGG
CGGCGCGTCG CCCTGCTGAA AGGGCTGGAC GCGAGCATCC TGGAAGAAGT GCGCGAGAAG
ATGACGCTCA CCCCGGGAGC GCGCACCCTG ATCCGCACCC TCAAATTCCT CGGCTACGAG
TGCGCCATCG TCAGCGGCGG CTTCACCCAG CTCACCGACT ACCTGGTGGA AGAGCTCGGC
ATCGACTACT CGGCGGCCAA CGTCCTCGAA ATCGTCGACG GCAAGCTCAC CGGTTCGCTG
GTCGGACCGA TCATCGACCG GAAAGGCAAG GCCGCGGCCC TGGAGCGGTT CGCCGCGGAG
GCGGGGGTGC CGCTCAGCCA GACCGTGGCG ATCGGCGACG GCGCGAACGA CCTCGACATG
CTCCGGGTCG CCGGGCTCGG GGTGGCGTTC AACGCCAAAC CGGTGGTCCG TGCCCAGGCC
GACACGTCGG TGAACGTGCC CTACCTCGAC ACGGTGCTCT TCCTGCTGGG GATCTCCCGG
GAGGAAGTGG AAGCCGCGGA ACGGGGCAGC TACGCCTGA
|
|---|
| Protein sequence | MPARDWGALV YATVVQQSTF RAVMTLANSV PETLLVTVTG KDRPGISARL LSTLSVFPVT
ITDLEQVVIG GRLLLGALLS ADERVAPGVR KERLFEEIRS AVSKVAVDMD MDVDFMVDGE
RVRPCTGTRL DVTIMGDPLR PGAVGAIASC VARAGANIDR IERLASYPVT ALSLSLTGGN
LEQLRTDLAL EAATQSVDVA VQTSGLHRRS KHLVVMDVDS TLIQCEVIEL LAQYAGCGDE
VARITEEAMR GELDFEESLR RRVALLKGLD ASILEEVREK MTLTPGARTL IRTLKFLGYE
CAIVSGGFTQ LTDYLVEELG IDYSAANVLE IVDGKLTGSL VGPIIDRKGK AAALERFAAE
AGVPLSQTVA IGDGANDLDM LRVAGLGVAF NAKPVVRAQA DTSVNVPYLD TVLFLLGISR
EEVEAAERGS YA
|
|---|
| |