Gene Tery_4370 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTery_4370 
Symbol 
ID4246023 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTrichodesmium erythraeum IMS101 
KingdomBacteria 
Replicon accessionNC_008312 
Strand
Start bp6738117 
End bp6738773 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content39% 
IMG OID638109258 
ProductRNA polymerase sigma factor RpoE 
Protein accessionYP_723835 
Protein GI113477774 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.338054 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0299236 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCAAT ATATGTATGT ACCGTGGTCT AAGGTAGAAC AAACCCTTTC GCAAGTGGAA 
TTGCCACCAG AAAAACTCTC TAACTACGAT CTAGTATTGC GCTGCCAACA AGGTAGTCGC
CCAGATCGTA CAACTTTTGC AGAACTTCTA CATCGATACC AACTCCATGT AGATAAAATC
TTATATCACT TGGCCCCCGA ATGGCAAGAT AGATCTGATT TGGCCCAAGA GGTTTGGATC
CGTGTATATC GTAATATTAG AGGCCTACAA GAACCAGCAA AATTTAAGAG CTGGCTCAGT
CGGATAACAA CTAATCTATT TTATGACGAG TTACGGAAAC GAAAACGAAT TACCCCACCT
CTATCGTTGG ACGCTCCTTT GACTTTAGAT GATGGTATAG TAGATTGGGA AATTGCTACA
GATAAACCAG GACCAGAAGA ACAATTAACC ACACAAGAAT TTTACGATCA TCTTAGAGAT
GCGATCGCTC AATTACCTGA AGTATTCAGA GTAACTATTA TCTTGAGAGA AATTCAGGGT
TTATCATACG AAGAAATTTC AGAAATTACA GGAGTTTCTC TAGGAACTGT TAAATCAAGA
ATTGCTAGAG CTAGACAAAG ATTACAATTG CAGCTCCAAA AATATTTAGA TATTTGA
 
Protein sequence
MSQYMYVPWS KVEQTLSQVE LPPEKLSNYD LVLRCQQGSR PDRTTFAELL HRYQLHVDKI 
LYHLAPEWQD RSDLAQEVWI RVYRNIRGLQ EPAKFKSWLS RITTNLFYDE LRKRKRITPP
LSLDAPLTLD DGIVDWEIAT DKPGPEEQLT TQEFYDHLRD AIAQLPEVFR VTIILREIQG
LSYEEISEIT GVSLGTVKSR IARARQRLQL QLQKYLDI