| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_3355 |
|---|
| Symbol | |
|---|
| ID | 4243449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | - |
|---|
| Start bp | 5146012 |
|---|
| End bp | 5147667 |
|---|
| Gene Length | 1656 bp |
|---|
| Protein Length | 551 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 638108339 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_722930 |
|---|
| Protein GI | 113476869 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.188345 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAAC ATAAATCATT TAATTCAATC AACCATTCCT GGCAGTCAAT AATTCAATTT
TTTGGCTTAT TTTGTCTTTG CTGTTTCCTG GTCATTAGTT GTAGCCAACC TCAAAATAAC
CCCGACAATA CTCTAACTAT AGAAACAAAT ACAAATCGCA TTACTATAGG CACAACTTTA
AAACCTCGGA CTATCGACCC GGCAGATGCC TACGAAGTAA TATCTGGTAA CTTACTCCAT
AACTTAGGCG ATCGCCTCTA CGGTTATAAG CTAGGAACAA TGGAACTTGT ACCATCACTA
GCAACAGAAA TGCCAAAAAT TAGTGAAGAT GGCACAACAT ATACTATTCC CATTCGTCAA
GGGGTGACAT TCCATGACGG TACTCCTTTC AACGCTGAAG CAATGGCCTT TTCTTTCAAA
CGTTTTATTA AAAATAGTGG CCCACCTTCT TCTTTGTTAA CTAATACTAT TAAATCAGTA
GAAGCTACGG GAGAATACCA ATTAACAATT AAGTTGAAAA AACCCTTTGC AGCTTTTACT
TCTTTATTAA CATTTTCTGG TCTGTGTGCT GTTTCCCCAC AAGCTTATGA AATAGGTGAA
AGTCAATTTA AACCTGATAC ATTTATTGGT ACTGGTCCCT ATAAATTAGC TGAGTATGGT
ACTGATACTT TACGCTTAGA TGTATTTGAA AATTATTGGG GAGAAAAACC AAAAAATCAA
GGAATTGACA TTCAAATATT TTCTAGTTCA GCTAACCTAT TTAATGCTTT TAAAACAGGG
TCTATTGATG TAGCTTATTT TTCTCTAGAC ACTGACCAAA TTACTAATTT AGAAGCTGAA
GCTATCCGTC AAGGATGGCA AGTAATTTCT ACAGATGGTA AGACAGTTAA TTATATGGTT
TTAAATCTCA ATTTAGAACC ATTAAATAAC AAAGCTGTTA GACAAGCTTT AGCATCTATT
ATTGATAGAA AATTACTAAA TGAACGAGTT TTACAAGGAA AAGCTGAACC AGTTTATAGT
CTAATTCCTA AACAAATTAA TAGCTATAAA CCAGTGTTTA AAGAAAACTA TGGAGATGGA
AATTTTGCTC AAGCTAAGGA GTTATTAAAA GAGGCAGGAT ATTCTCGAAA TAGCCCAGCC
AAAATTGAAA TTTGGTATGC TGCAAATTCT ACTAAGAGGC AATTAACAGC TAGTACATTA
AAAGCATATG TAGATCAAAA TTTAGAAGGT TTAATGGAGT TAGAATTGAA TAGCGTAGAA
GCAGCTACTG CTTTTAATAA TTTAGATAAA GGAGTATATC AAACATTTAT TTTAGACTGG
TATGGAGACT TTCTTGATGC GGATAATTAT ATCCAACCAT TTTTAGAATG TATCAAAGGT
TCAAAAGAAA AAGGTTGTGA AGAAGGGGCT AGTCAATTTC AAGGTTCATT TTATTATAGT
GATCGGATAA ATAAATTAAT CCAACAACAA CGTCAAGAGC AAAACCCAGA AAAGCGGCTA
GCTATTTTTG TAGAAATTCA AGAATTATTA GCAGAAGATG TTCCTTTTAT CCCATTATGG
TTAGATAAAG ATTATGTATT TGCTCAGAAA AACATCAGTG GGGTTAGTTT AGAACCTACT
CAGCAATTTT CTTTCTTGAA AATTAATAAA TCATAA
|
|---|
| Protein sequence | MEKHKSFNSI NHSWQSIIQF FGLFCLCCFL VISCSQPQNN PDNTLTIETN TNRITIGTTL
KPRTIDPADA YEVISGNLLH NLGDRLYGYK LGTMELVPSL ATEMPKISED GTTYTIPIRQ
GVTFHDGTPF NAEAMAFSFK RFIKNSGPPS SLLTNTIKSV EATGEYQLTI KLKKPFAAFT
SLLTFSGLCA VSPQAYEIGE SQFKPDTFIG TGPYKLAEYG TDTLRLDVFE NYWGEKPKNQ
GIDIQIFSSS ANLFNAFKTG SIDVAYFSLD TDQITNLEAE AIRQGWQVIS TDGKTVNYMV
LNLNLEPLNN KAVRQALASI IDRKLLNERV LQGKAEPVYS LIPKQINSYK PVFKENYGDG
NFAQAKELLK EAGYSRNSPA KIEIWYAANS TKRQLTASTL KAYVDQNLEG LMELELNSVE
AATAFNNLDK GVYQTFILDW YGDFLDADNY IQPFLECIKG SKEKGCEEGA SQFQGSFYYS
DRINKLIQQQ RQEQNPEKRL AIFVEIQELL AEDVPFIPLW LDKDYVFAQK NISGVSLEPT
QQFSFLKINK S
|
|---|
| |