| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_3030 |
|---|
| Symbol | |
|---|
| ID | 4244914 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | + |
|---|
| Start bp | 4679318 |
|---|
| End bp | 4679872 |
|---|
| Gene Length | 555 bp |
|---|
| Protein Length | 184 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 638108061 |
|---|
| Product | tripartite ATP-independent periplasmic transporter DctQ |
|---|
| Protein accession | YP_722654 |
|---|
| Protein GI | 113476593 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000261237 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGCAAATAC TTCTACGCCT GTCCCGAATA ATTGATGATT TGAATGAGCG AATTGGACGC
CTAACTTATG GCTTAGTCAT ACTAATGGTC TTAGTTGGTT TTTGGAATGT GATTGGACGC
TATCTAGGTA GGACTATTGG TCAAAACTTA ACTTCTAATG CTTTTATTGA AATCCAGTGG
TATATTTTTG ACCTGGTTTT TCTTCTGGGT AGTGCTTATT CACTAAAACA CAATGAACAC
GTTCGTGTAG ACATTTTTTA TACTAAGTGG AGTCCCAAAA GAAAAGCTCT AGCTAACTTA
ATTGGTACAA TATTTTTCTT AATTCCCTTT AGCATTATTA TAGTCGTAGT TTCCTGGGGT
GCTGTTTTAA ATTCCTGGGC TATCTTTGAA ACTTCCCCTG ACCCTGGTGG GTTACCCCGT
TACCCAATTA AAACAATGAT TATAGTTAGC TTTATATTAT TATTTCTTCA AGGAATTTCT
GAAGCAATTA AAAATTTTGC AGTTTTGACA GGTAAATTAG CCCCCCATCA GGAGTCTCAT
GAGTCTGAGT TTTGA
|
|---|
| Protein sequence | MQILLRLSRI IDDLNERIGR LTYGLVILMV LVGFWNVIGR YLGRTIGQNL TSNAFIEIQW
YIFDLVFLLG SAYSLKHNEH VRVDIFYTKW SPKRKALANL IGTIFFLIPF SIIIVVVSWG
AVLNSWAIFE TSPDPGGLPR YPIKTMIIVS FILLFLQGIS EAIKNFAVLT GKLAPHQESH
ESEF
|
|---|
| |