Gene Tery_2499 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTery_2499 
Symbol 
ID4245268 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTrichodesmium erythraeum IMS101 
KingdomBacteria 
Replicon accessionNC_008312 
Strand
Start bp3855819 
End bp3857666 
Gene Length1848 bp 
Protein Length615 aa 
Translation table11 
GC content33% 
IMG OID638107580 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_722179 
Protein GI113476118 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0730388 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTGTTA CACAAATACC AGGGGTTTGT TCATTGAGAC TGATATTAAA TTTAATAGCT 
ACTATTTCGA GAATTCATAC TTTTCATCTA TTGAAAGGGT TAACGTCCTT GCTATTAACC
TGTGATTATT TATCAATTTG GAAGAGCTTT AAGCAGTTTA CTAATAAAAT TTATCAGCTT
ATTCATTATA TTTATAAATT ACTTCAGCTC AACTCTGCCT TTTGGAAAAA GCTCAAGTCT
AAGGTGGATG ATGTTTTATC TAGTGGTCGA AAAAAGTTGA TTAAACTAAA TGAACAAGCT
ATAGATTCTT CTATGCAAAT TTATTATAAT GATAATAATG ATAATAATGA GGTAGCAAAG
CAGGTAATTG TTAAAAAGCT CAAGAAACAC AGACAAAAAC AAGCTACACT TTTATATAAG
GCATTTCACG ATGGGCTGAC GGGTTTACCA AACCGTAATT TGTTTTTTAA TGAACTAAAA
CTAGTTTTAC ATCAGTCTAG AAAAGACCTA AGTTATAAGT ATGGGGTTCT GTTTTTAGAT
CTAGATCGCT TTAAAGTAAT TAATGATAGT TTGGGGCATG TTATTGGAGA TCAAGTATTA
GTCATCATCA GCAGGCGACT ACAGAATTAT ATCAAAGCTT CAGATACTGT GGCGAGGTTA
GGAGGGGATG AGTTCACTAT CTTACTAAGG TCTCTACCCG ATGCTGACTA TGCTACTAAA
GTAGCTATGA AAATTAATCA AGAACTTGCT CAACCAATTT ATGTTGAAGG ACATGAAATA
TTTACTACAG TAAGTATTGG CATTGTTACT AATTGTAAAC AGTTTAGTGA TCAGCTCGGT
GAAAATAGTT TTCCTATTTG TCCTATTTAC AACCACCCAG AAGATGTACT GCGAGCTGCA
GATATTGCGA TGTATCGGGC TAAAGATTTA GGTAAGGCAA GGTATGAGGT GTTTGATTTG
ACAATGCACA GAGAAGTTGT ATCTTTATTA GAATTGGAAA ATGATCTACG ACGAGCTGTA
GAAATGATTA AACAAAATCC AGTAAATTCT CAGTTTTTTT TAAGTTACCA ACCAATTATT
TGTTTAACTA CAAATAAAAT TACTGGTTTT GAATGTTTGG TACGCTGGGC TCATCCTACT
AAAGGCTTAA TTCAACCAGG AAAGTTTATC CCATTGGCAG AAGAAACGGG TTTAATTATT
CCTCTAGGAA TGTGGATATT GCGAACGGCT TGTCATCAGT TGGCTGTTTG GCAGAAAAGG
TTGACAGGGA GACATGTTTG CTCTGGTTTG GCATATTCTG ACTGTAATTT TATTGCTCAT
AATTTTACTA TGAGTGTCAA TATTTCTAGC AAGAATATCT CACAACCAAA TTTTTTGGAA
CAAGTTAATG AAATTTTGGC GGCAACAAAT TGTCAACCTC ATTGTTTGAA TCTAGAAATT
ACTGAAAGTT TAATTATGAC AAATGTTGAT TTAGCTACTG CAGTTTTTGA GAAACTGAAA
AATCAAAATA TTAGATTATC AATAGATGAT TTTGGTACTG GTTATTCGTC GTTAAGTTAT
TTACATCAGT TTCCTATTAA TACTATTAAA ATTGACCGTT CTTTTGTGAG TCAATTAGAT
TCGGATACAA GCGGTCAAAC TTTAAAAATT GTGAGTGCTG TTATTGCATT GGCTAATAAT
TTAGATTTAG AAATAATTGC AGAAGGAATA GAAACTAAGG CTCAAATGAA TCAGCTCAAG
CAACTTAAGT GTCGCAAAGG ACAGGGGTAT TTTTTCTCAA AGCCATTGAC AACTTCCAGT
GTAAATGAAC TACTTCAGTT TACCTCACTA ACTAGTCCTT TTCTTTAA
 
Protein sequence
MIVTQIPGVC SLRLILNLIA TISRIHTFHL LKGLTSLLLT CDYLSIWKSF KQFTNKIYQL 
IHYIYKLLQL NSAFWKKLKS KVDDVLSSGR KKLIKLNEQA IDSSMQIYYN DNNDNNEVAK
QVIVKKLKKH RQKQATLLYK AFHDGLTGLP NRNLFFNELK LVLHQSRKDL SYKYGVLFLD
LDRFKVINDS LGHVIGDQVL VIISRRLQNY IKASDTVARL GGDEFTILLR SLPDADYATK
VAMKINQELA QPIYVEGHEI FTTVSIGIVT NCKQFSDQLG ENSFPICPIY NHPEDVLRAA
DIAMYRAKDL GKARYEVFDL TMHREVVSLL ELENDLRRAV EMIKQNPVNS QFFLSYQPII
CLTTNKITGF ECLVRWAHPT KGLIQPGKFI PLAEETGLII PLGMWILRTA CHQLAVWQKR
LTGRHVCSGL AYSDCNFIAH NFTMSVNISS KNISQPNFLE QVNEILAATN CQPHCLNLEI
TESLIMTNVD LATAVFEKLK NQNIRLSIDD FGTGYSSLSY LHQFPINTIK IDRSFVSQLD
SDTSGQTLKI VSAVIALANN LDLEIIAEGI ETKAQMNQLK QLKCRKGQGY FFSKPLTTSS
VNELLQFTSL TSPFL