| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_2178 |
|---|
| Symbol | |
|---|
| ID | 4242630 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | + |
|---|
| Start bp | 3401988 |
|---|
| End bp | 3402638 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 638107282 |
|---|
| Product | thylakoidal processing peptidase |
|---|
| Protein accession | YP_721882 |
|---|
| Protein GI | 113475821 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0681] Signal peptidase I |
|---|
| TIGRFAM ID | [TIGR02227] signal peptidase I, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.338284 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAG AAGAAAAATC AACACATAAA GAAAATCAAA ATGAAGAAAA TCCTTTGATT
GAGTCAATAA AAACTATTGG ACTTAGCGTG ATTTTAGCTA TAGGAATTCG TCAATTTGTT
GCCGAAGCAC GTTTTATTCC CTCTGGTTCG ATGCTACCAA CATTACAAAT TAATGACCGC
TTGATTATAG ATAAATTGGG TTATCAATTC CAAGAACCGA AAAGAGGAGA TATTGTGGTT
TTCAACCCAA CAAATGAACT AAAAACTCAG TATAAAGATG CTTTTATTAA ACGGATAGTT
GGATTACCTG GAGAGCGAGT AGAATTGAAA GATGGAAAGG TATATATAGA TAATCAGATA
GTAGAAGAAA CTTATGTTGC TTCAGATTCT AATCCAGCAG AACTTGAAGC TAGAAAAACT
AATCACCAAC AAACAAGAAT AGATGTCTGC CCTCCTGATA AAAGATTTCT TTCTCAACCT
GTGGAAGTGC CTCCAAATTC TTATTTGGTT ATGGGGGATA ATCGTAATCA TAGTTATGAT
GGCCGATGTT GGGGTTTTGT ACCTTATGAA AATATTATTG GTCGAGCTAT ATTTCGCTTT
TGGCCTTTTA CTAGTCTTGG TACAATAGAT GAACTACCAT TATACGAGTA A
|
|---|
| Protein sequence | MNKEEKSTHK ENQNEENPLI ESIKTIGLSV ILAIGIRQFV AEARFIPSGS MLPTLQINDR
LIIDKLGYQF QEPKRGDIVV FNPTNELKTQ YKDAFIKRIV GLPGERVELK DGKVYIDNQI
VEETYVASDS NPAELEARKT NHQQTRIDVC PPDKRFLSQP VEVPPNSYLV MGDNRNHSYD
GRCWGFVPYE NIIGRAIFRF WPFTSLGTID ELPLYE
|
|---|
| |