Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tery_1214 |
Symbol | |
ID | 4241787 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Trichodesmium erythraeum IMS101 |
Kingdom | Bacteria |
Replicon accession | NC_008312 |
Strand | - |
Start bp | 1886638 |
End bp | 1888128 |
Gene Length | 1491 bp |
Protein Length | 496 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 638106430 |
Product | RNA polymerase, sigma 28 subunit |
Protein accession | YP_721042 |
Protein GI | 113474981 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.672098 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAATGA TAGGGCATAC ATTAGAACTA GACGATCTAA AAAAAATTAG TAGCCCGAAA AAGATAGTAG CTTTGTTTGA AAAACTTGGC TTCAATTTCC AAATTGAACA TTTAGATATT GAACAACTAG AACTACCAAG TTATTGCAGA GAAACGATTG ATAATACTTA TAAAATTTAT AATCCGAACC AAGAGGAATT ACAAGTATTT CTTTTAGAAT TAAGACAAGA AAAATTTAAA ACAAATTATA AAGAGCAAGA AAGAATAATA ACTATTTCTC AGGGAATCTT GAGAAACAAA AATAATTTCT TGCTAATTGC CACAAAAAAA TATAATAAGT TAATAATAGT TGCTCCTCAT AGAAGAGAAA ATCAAAATAT TAAAATTTCA ATTAAATGGT GGTTAATTGA TTGTCAAAAT CCTAATTATT ATGATACTTA CTGGCTAGAA AATGTAGCTA TAAATAATTG TGAACCTACA GAAGAATTGA CAAATAAACA TAATAGTGAA GGTAGCTACG ACCCAGACAT AGAACCGCCT ACTGGAACAT TTACTGAAGA CTCAATTCAA CTTTATTATA AGCAAGTTAA TAGCTTCGCC CGCTTGCACC CTGAGGAAGA AATTCATTTA GCACATCAAA TTGATGGGCT ATTAGCTTTA GAGAAAATTT ATGAAAAATT AGAGGAAAAG CTCAACCGTT CGCCTAACGA AATAGAATGG GCAACAGAAG CCAAAATGAG CAAATGGGAA CTGTGTGATC GCCTCGAGCA AGGTAGACGA GCTAAAAATC AAATGGTGAC AGCTAACTTG CGACTGGTGA CATCAGTTGC CAAACGATAC CAAAACCGTG GTCTAGACTT CCAAGATTTA ATTCAAGAGG GAGTTATAGG ATTACTTCGT GCCACAGAAA AATTTGATCA TACAAAAGGT TATAAGTTTT CTACTTATGG TATTTGGTGG ATTCGACAAG CTATTACCAG AGCTATTTGT GACTATTCTC GGATCGTTCG GTTGCCAGTT TATCTCTACG AAACTATTTC CCAAATTAAG AAAATAGTTA AGCAAATTTC AATAGAATGT TCTCCCCTAA CTGCAGAAGA AGTTGCTACA CGCATGGAAA TGACAACGGA GAAGTTGCAA TTTATTATAG AATGCGCTCA AGAAACTTTA TCTCTAGACT ACCCTATAAA TAAAGGGGAA AACATTATCT ACAAGGAAAT GATTAAATTT AATGGGGAAA CACCAACAAA ATATGTCTTT GAAAATTGCT TGCAAGAAGA TGTAGAAAGT GTTTTGAAAA CTCTAACTGA ACGAGAAAGA AATGTGTTAC AAATGCGATT CGGTTTGGAT GATGGTCAAG AAAAGACCCT CAAAGAAATT GGTGATACTT TTAATTTAAC GCGGGAAAGA ATTAGGCAAA TAGAGGCTAA AGCATTGAGA AAGTTAGAAG ATCCAAAGCG AAACCATATT CTCAGGGAAT ATATTCATTA G
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Protein sequence | MIMIGHTLEL DDLKKISSPK KIVALFEKLG FNFQIEHLDI EQLELPSYCR ETIDNTYKIY NPNQEELQVF LLELRQEKFK TNYKEQERII TISQGILRNK NNFLLIATKK YNKLIIVAPH RRENQNIKIS IKWWLIDCQN PNYYDTYWLE NVAINNCEPT EELTNKHNSE GSYDPDIEPP TGTFTEDSIQ LYYKQVNSFA RLHPEEEIHL AHQIDGLLAL EKIYEKLEEK LNRSPNEIEW ATEAKMSKWE LCDRLEQGRR AKNQMVTANL RLVTSVAKRY QNRGLDFQDL IQEGVIGLLR ATEKFDHTKG YKFSTYGIWW IRQAITRAIC DYSRIVRLPV YLYETISQIK KIVKQISIEC SPLTAEEVAT RMEMTTEKLQ FIIECAQETL SLDYPINKGE NIIYKEMIKF NGETPTKYVF ENCLQEDVES VLKTLTERER NVLQMRFGLD DGQEKTLKEI GDTFNLTRER IRQIEAKALR KLEDPKRNHI LREYIH
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