Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tery_0618 |
Symbol | |
ID | 4241989 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Trichodesmium erythraeum IMS101 |
Kingdom | Bacteria |
Replicon accession | NC_008312 |
Strand | + |
Start bp | 1002049 |
End bp | 1004481 |
Gene Length | 2433 bp |
Protein Length | 810 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 638105921 |
Product | exonuclease RecJ |
Protein accession | YP_720534 |
Protein GI | 113474473 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.195781 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00316903 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGTCTCAAG AAAAAAAATA TTGGCAAATC CTGAGTTCCA ATCATCCACC TTATTCATTT ATTGAATCTT TCAAAAGCTA TGTACCAGAA TTATCGGGAA AATATCTAGC ACAATTATTA TGGCAACGTG GAATTAAAAA TCCTGAAGAT ATAGCATCAT TTTTAGATCC GAAACAATAT AAACCAGCTA GTTTTTCAGC ATTTGGCTCA GAAATTAATA ATGCCGTAGC AAGAATTATT TCTGCTAGAA ATAATCAAGA AAAAGTTGCT ATCTGGGGAG ATTTTGATGC AGATGGGATT ACGTCAACAT CTGTACTATG GGATGGATTA GGAGAATTTT TAGATAAAAT AGACCAACTA ACTTATTATA TTCCTAATAG GTTTACAGAA TCTCATGGTT TGAATTTTTC TGGAATAGAA AGGTTAGCTA AAAAAAATTA TAGTTTGATA ATTACCTGCG ATACAGGTAG TACAAATATT GCCGAAATAG AATATGCAAA TAGTTTAGGT ATAGATATAA TTGTTACTGA TCATCATACT ATTCCCACAA AACGCCCACC GTTATTTGCT ATTATTAATC CTCGCTATTT TTCTCAAGAT CATCCCCTAT ATAATTTATC TGGAGTTGGA GTAGCTTATA AGCTTATAGA GGCACTTTAT TTAACTCATC CGGAAATACC TCAACTTCCC CTAACAGAAT TATTAGATTT AGTAGCTATT GGTTTAATTG CAGATCTAGT TGAACTAAGA GATGACTGTC GTTATTTAGC ACAAATAGGT ATTGAAAAAT TAAGGACACA ATTACACAAA ACTACCAGGC CAGGAGTTGC TAAACTTTTA GAATTGTGCC AAAAAACAGG CGATCGCCCT ACAGATATTT CTTTTGGTAT TGGCCCTCGA ATTAATGCTG TAAGTAGAAT TATGGGAGAG GCCAGTTTTT GTGTGGAACT ATTGACAAGT CGTAACCCTC AACATTGTCA AAAACTAGCG TTACAAACAG AGTTGGCTAA CTCTAGGCGC AAGTCTCTAG AAAAAGAAGT AGCTAAAGAT ATTGCCCAAA AATTGACAAA ACTAGACCTT TCTACGACTC ATGTCATAGT TCTGAGTGAT CCTCAATGGC CTGTTGGTGT GCTAGGATTA GTGGCAGGCC AAATAGCTCA AAAGTATGGT CGTCCTACTA TTTTATTTAG TGAGGAAACT GAAGTTACTA AAACTTCTGA AAAAAAATTA TTAGCTCGCG GTTCTGCCCG TTCTGTTGGT AATATAAATC TTTATGAGTT GGTGAAAAAT CAAGCACATT TGTTACATAA TTTTGGCGGT CATCCTTTTG CTGCTGGTCT GAGTTTACCA GTAGAAAATA TTTCAATATT TACAGATGCT ATTAATCAGT TATTGGGAGA AATATTAGGG GTCACTTTTA ACCAAACCTC AGTAATAGAA GTAGATTTAA TTATCACTGT ATCTGAGTTA GGTAGAGATT TATTTCAAGA ACTAAAGCTT TTGGAACCCT GTGGTATGGG AAACCCGGTG CCTAAACTTT TAATTCAAAA TTGTTGGTTT ACTGATATTT GGCATCAGAA CCAAACAGAC ATGGAGGGAA ATAAAGTCAG ATATATTAAA ACAAATTTTG AAATTTGCGA TAAGTCTATA GATAAAGGGT TTCCTGGTAT TTGGTGGGGT CATTATAAGG AAGAAATTCC TGAAGAAATA TGTGATGCTG TTCTAGAATT AGATTTCAAT GCTAAAAAAA AATGTTATGA AGCTCGACTT ATTGCTGTAC AACCCAATTC CCAAGATAGT CAAGTCGTAG CATCGAACAC CGTAAATTGG ATATTAGACT GGCGCAATAA TAGTCAACCT CTTTTTGAAA ATAAAAACTC AAAGTTCCTA AATAAAAATT ATAGTGACAC GAATGAATCT AAGTTATCCC TTCGCGAAAA TGAAAAAGAC TTAATTGTTC TTACCCAATG TCCCACAAAC TGGAATGATT TACGCATCTG GTTCCGACGA GCAATAAATC AACAAAAAAA ACTAGCGATC GCTTACTCCC AACCTTTTAT TACCCACCCT CTACAAATCT GGCAACAACT TCTGGGAATT GCCAAATATC TTAGCCGTAC AGGTCAACCT GTAACTCCTG ATCAATTGGT AAAAAAGTTA AGTATTAGTG ATACTACTCT TAAATTAGGT TTAATAGCAT TACAATATTT TGGATTTAAT GTCAAGTATA AAGATAAATA TTTTTACATT ATTCAGAGTC AAAGCCAAAA TCAAAAATTA GAAACTTTAT CCCAAACAGT CCAAAAGTTC CTCGCAGCAG TATCAGAAGA ACAATTTAGG GAAAAATACT TTTGTGAAGT GCCCCTAAAA ATAATAGAAG CGATCGCAAT TCAAACAATT TTAGAAGATG CTAATAGTTC TATTCCCTTC TAG
|
Protein sequence | MSQEKKYWQI LSSNHPPYSF IESFKSYVPE LSGKYLAQLL WQRGIKNPED IASFLDPKQY KPASFSAFGS EINNAVARII SARNNQEKVA IWGDFDADGI TSTSVLWDGL GEFLDKIDQL TYYIPNRFTE SHGLNFSGIE RLAKKNYSLI ITCDTGSTNI AEIEYANSLG IDIIVTDHHT IPTKRPPLFA IINPRYFSQD HPLYNLSGVG VAYKLIEALY LTHPEIPQLP LTELLDLVAI GLIADLVELR DDCRYLAQIG IEKLRTQLHK TTRPGVAKLL ELCQKTGDRP TDISFGIGPR INAVSRIMGE ASFCVELLTS RNPQHCQKLA LQTELANSRR KSLEKEVAKD IAQKLTKLDL STTHVIVLSD PQWPVGVLGL VAGQIAQKYG RPTILFSEET EVTKTSEKKL LARGSARSVG NINLYELVKN QAHLLHNFGG HPFAAGLSLP VENISIFTDA INQLLGEILG VTFNQTSVIE VDLIITVSEL GRDLFQELKL LEPCGMGNPV PKLLIQNCWF TDIWHQNQTD MEGNKVRYIK TNFEICDKSI DKGFPGIWWG HYKEEIPEEI CDAVLELDFN AKKKCYEARL IAVQPNSQDS QVVASNTVNW ILDWRNNSQP LFENKNSKFL NKNYSDTNES KLSLRENEKD LIVLTQCPTN WNDLRIWFRR AINQQKKLAI AYSQPFITHP LQIWQQLLGI AKYLSRTGQP VTPDQLVKKL SISDTTLKLG LIALQYFGFN VKYKDKYFYI IQSQSQNQKL ETLSQTVQKF LAAVSEEQFR EKYFCEVPLK IIEAIAIQTI LEDANSSIPF
|
| |