| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_0513 |
|---|
| Symbol | |
|---|
| ID | 4242361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | + |
|---|
| Start bp | 816445 |
|---|
| End bp | 817824 |
|---|
| Gene Length | 1380 bp |
|---|
| Protein Length | 459 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638105827 |
|---|
| Product | photosystem II 44 kDa subunit reaction center protein |
|---|
| Protein accession | YP_720441 |
|---|
| Protein GI | 113474380 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01153] photosystem II 44 kDa subunit reaction center protein (also called P6 protein, CP43), bacterial and chloroplast
[TIGR03041] chlorophyll a/b binding light-harvesting protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.50837 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTAACGC TGTCTAATTC TATAATAGGG GGTCGTGACC AACAATCCAC CGGTTTTGCT
TGGTGGTCTG GAAACGCCCG TCTAATCAAT CTATCTGGTA AACTGCTTGG TGCTCACGTA
GCCCACGCAG GTTTAATTGT ATTTTGGGCC GGAGCAATGA CTTTGTTTGA AGTTGCTCAC
TTTGTCCCAG AAAAGCCAAT GTATGAACAA GGCTTAATTC TAATGCCCCA CGTTGCCACT
ATAGGCTGGG GTGTTGGTCC TGGTGGTGAA ATAGTTGACA TTTTTCCATT CTTTGTAGTA
GGCGTTTTAC ACCTAATTTC ATCTGCTGTT CTGGGTTTGG GCGGAATTTA TCATGCCGTT
CGTGGCCCAG AAACTTTGGA AGACTATTCT TCTTTCTTTG GATATGACTG GAAAGATAAG
AACCAGATGA CTAATATTAT TGGCTACCAC TTAATTATAT TAGGTTTGGG CGCATTCTTA
TTAGTAATCA AAGCTGTGTT CTTGGGTGGT GTCTATGATA CTTGGGCACC AGGTGGCGGT
GATGTACGAG TAATTACTAA CCCTACTTTG AATCCTGCTG TTATATTTGG TTATCTACTT
AAAGCGCCTT TTGGTGGTGA AGGCTGGATC ATTGGCGTTA ATAACATGGA AGATATTATC
GGTGGTCATA TCTGGATTGG CCTAATTTGT ATCTCCGGTG GTATTTGGCA TATTCTAACT
AAGCCTTTTG GTTGGGCACG TCGCGCTTTC ATCTGGTCTG GAGAAGCTTA TCTATCCTAC
AGTTTGGGCG CCCTGTCTTT GATGGGTTTA ATTGCTGCCG CTTTCGTATG GTTTAACAAC
ACTGCTTATC CTAGCGAATT CTATGGTCCT ACTAATGCTG AAGCTTCTCA AGCTCAGTCT
TTTGTGTTCT TAGTCCGTGA CCAAAAATTA GGTGCTAATA TTGGTTCTGC TCAAGGTCCT
ACTGGTCTTG GTAAGTACCT AATGCGCTCT CCCACTGGTG AGATCATATT CGGTGGTGAA
ACAATGCGTT TTTGGGACTT TCGTGGTCCT TGGTTAGAGC CTCTTCGTGG TCCTAACGGT
TTAGACTTGA GTAAACTGAA GAACGATATT CAGCCTTGGC AAGTTCGTCG TGCTGCTGAG
TACATGACTC ATGCTCCTAA TGGTTCTATC AACTCTGTAG GTGGTATTAT TACAGATATT
AACGGTTTCA ATTATGTAAA CCCTCGTGCT TGGTTAGCTG CCGCTCACTT TATTCTTGGT
TTCTTCTTCT TAATTGGTCA CTTGTGGCAT GCTGGTCGCG CTCGTGCTGC TGAGGGTGGT
TTTGAGAAGG GTCTGGACCG TCAAACTGAG CCAGTACTAT CTATGCCTAA CCTTGACTAA
|
|---|
| Protein sequence | MVTLSNSIIG GRDQQSTGFA WWSGNARLIN LSGKLLGAHV AHAGLIVFWA GAMTLFEVAH
FVPEKPMYEQ GLILMPHVAT IGWGVGPGGE IVDIFPFFVV GVLHLISSAV LGLGGIYHAV
RGPETLEDYS SFFGYDWKDK NQMTNIIGYH LIILGLGAFL LVIKAVFLGG VYDTWAPGGG
DVRVITNPTL NPAVIFGYLL KAPFGGEGWI IGVNNMEDII GGHIWIGLIC ISGGIWHILT
KPFGWARRAF IWSGEAYLSY SLGALSLMGL IAAAFVWFNN TAYPSEFYGP TNAEASQAQS
FVFLVRDQKL GANIGSAQGP TGLGKYLMRS PTGEIIFGGE TMRFWDFRGP WLEPLRGPNG
LDLSKLKNDI QPWQVRRAAE YMTHAPNGSI NSVGGIITDI NGFNYVNPRA WLAAAHFILG
FFFLIGHLWH AGRARAAEGG FEKGLDRQTE PVLSMPNLD
|
|---|
| |