Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tery_0224 |
Symbol | |
ID | 4241820 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Trichodesmium erythraeum IMS101 |
Kingdom | Bacteria |
Replicon accession | NC_008312 |
Strand | - |
Start bp | 345347 |
End bp | 347230 |
Gene Length | 1884 bp |
Protein Length | 627 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 638105568 |
Product | secretion protein HlyD |
Protein accession | YP_720185 |
Protein GI | 113474124 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.538127 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.909062 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCACAAG AATTGAACTT AACTTTAGAG TCAAATGGTC ATAAACCTTT AGAGGTTGAC TTAGTAACAT TAGAAAAAAG TTTGAAGAAT TCTAACTATC AAGAAACAGC AGTTACAAAG TTAGATGAAT CTGTTGATGA TTGGTCTTTT GCTACTAAAG AATTATTAGA TGCTTTACCA CAACGTTGGA CACGAGGATT ACTATATCTT TTAATAGGAT TTGTAGCGAT CGCTCTCCCT TGGGGAATGT TTTCTCAAGT AGATGAAACT GGTTCAGCTA GAGGACGTTT AGAACCTCAA GGTGGTACTT TTAAACAAGA GCTAAATTTA ACGTTTACCG CATATACACA AACGGCAAAA GTTGAGAAAG TTTATGTTAA ACAAGGGGAT AAAATTAAGG CTGGAGATAT TTTAATAGAA TTAGAATCTC GCCCTATTCA TGACCGACTT GCTCAACTCC AAATTCAACT GCAAAATCAG AAAAATCGAC TTAGTAAGAT TCAACAACAA AAAAATCAAT TGGAAATTGA ACTTCGTACC CAAGAACGAC AAAATGAATC TCAAAAATTA GAAAAATTAG CTCAAGTGGG GCAAGCACGA CAAAACGCAC AATCTCTTAA AACAATGTAC AATTTACAGG AACAAGAAAA ACTGACCCAA GTTCATCAAG CAGAACAAAA TTTGGCGGCT CTCAGAAGAA CATTAAATTT ACAAAGGGAA GAAAAATTAG TACAAGTTTA TCAAGCAGAA GAAAATTTGG GAGCTCTTAA GAGAGCGTTG AGTTTACAGA AAGAAGAAAA AATGGCTCAA TTCAATCAAG CAAAACGACA ATTAAAAGAT AGTCAAATTG CTTATCAATT ATCAGAAATT CGCTGGGAAA AGGCTATGAA AGAAGTAGAA CGTTATCGTG GTCTTTGGGA CCAGGGTGTG GTGACGGAAA TACAATTAGT TGAGCATGAA AATATTGGGC GAGAAAGACA AAGAATGTTG GAGCAAAGTC AAGCAGATAT TGAGCAAGCT AAATTACGAA TAGAAGAGCA AGAGGGTAGT TATAAGAGGG TTATTCATCA AGGAAAGGCA GATATTAAGC AAGCTGAATT ACGTTTGGCA GAGCAAAAAG GTAGTTATGA AAGAATTATT AATCAAGGGG AGGCAGATAT TGAGCAAGCT GAGTTACGTT TGGCAGAACA AAAGAGTAGT TATGAAATGG TAATTAATCA AGTTAAGGCA GATATTAAGC AGGCTGAATT ACGTTTGAAT GAGCAAGAAA ATAGCTCTAA AACTATTACT CATTCTGGGA AAATTGCTAT ATCAAAAATA CAAGAGCAAC TTCAGAGTAT GGATAGTCAA ATTGTTAGTA TTCAAGGAGA AATTGCTCAG ACAAATAAAG AGATTGATTC TTTAAATTTT CAGTTAGAGC AACGAGTAGT TAGGGCGCAA CAGGGAGGTA CTATTTTTAA TTTCCCCATC AAAGGTGTGG GAGATGTTGT GCAACAAGGA GAGATGATAG TGGAGATAGC TCCTAGGGAA ACGAGTCTTT TATTAAAGGC GGATATGGCA ACTACAGAAA GTGGTTCGTT AAGGGAAGGA ATGGAGGTAA AAATGAAGTT TGATGCCTAT CCTTTTCAGG ATTATGGTGT AGTTGGGGGA TGGTTGAAAG AGATTTCTCC TACTTCAAAA ATGCAGGAAA CTGCTGAGGG AAATGTGGCT ATTTATGAGT TAAAGGTTGA GTTGGATGAG TATTGTATTC CTACTGCTAA TGAGTGTGTT GTTTTGCGTC CGGGGGATAC GGCAACGGCT GAGGTTGTTG TGCGTCAGCG TCCTTTGATT GATTTTATTC TTGACCCGTT TAAGAAGTTA CAAAAAGGAG GTTTAGAGTT GTAG
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Protein sequence | MPQELNLTLE SNGHKPLEVD LVTLEKSLKN SNYQETAVTK LDESVDDWSF ATKELLDALP QRWTRGLLYL LIGFVAIALP WGMFSQVDET GSARGRLEPQ GGTFKQELNL TFTAYTQTAK VEKVYVKQGD KIKAGDILIE LESRPIHDRL AQLQIQLQNQ KNRLSKIQQQ KNQLEIELRT QERQNESQKL EKLAQVGQAR QNAQSLKTMY NLQEQEKLTQ VHQAEQNLAA LRRTLNLQRE EKLVQVYQAE ENLGALKRAL SLQKEEKMAQ FNQAKRQLKD SQIAYQLSEI RWEKAMKEVE RYRGLWDQGV VTEIQLVEHE NIGRERQRML EQSQADIEQA KLRIEEQEGS YKRVIHQGKA DIKQAELRLA EQKGSYERII NQGEADIEQA ELRLAEQKSS YEMVINQVKA DIKQAELRLN EQENSSKTIT HSGKIAISKI QEQLQSMDSQ IVSIQGEIAQ TNKEIDSLNF QLEQRVVRAQ QGGTIFNFPI KGVGDVVQQG EMIVEIAPRE TSLLLKADMA TTESGSLREG MEVKMKFDAY PFQDYGVVGG WLKEISPTSK MQETAEGNVA IYELKVELDE YCIPTANECV VLRPGDTATA EVVVRQRPLI DFILDPFKKL QKGGLEL
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