| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_0130 |
|---|
| Symbol | |
|---|
| ID | 4245521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | - |
|---|
| Start bp | 186490 |
|---|
| End bp | 187761 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 638105479 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_720098 |
|---|
| Protein GI | 113474037 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | [TIGR03407] urea ABC transporter, urea binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0243473 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAG GATTAAAACG TAGGAAATTC TTAATTTATA GTTCGGCTGC TCTAGGTACC
AGTATTTTTC TCAAATCTTG TAGTAATAAT AATAATACCA CAACTAAAGA TGACAAAATT
AAAGTAGGTA TTCTCCATTC TCTCAGTGGC ACAATGGCAA TTAGCGAAAC TACAGTAGTT
GAAGCTGAAA AATTAGCAAT TGAAGAAATA AATGCTGCTG GTGGTGTATT AGGTAAGCAA
ATAGAAGCAA TTGTCGAAGA TGGTGCTTCT GACTGGCCAA CTTTTGCAGA AAAGGCAAAT
AAACTTATCG ATCAAGACCA GGTAGTTACT GTTTTTGGTT GTTGGACTTC TGCTTCCCGG
AAGTCAGTTT TGCCTGTTTT TGAATCTAAG AATCATATGC TTTGGTATCC CGTCCAATAT
GAGGGTCAAG AATGCTCCAA AAATATTTTT TATACAGGTG CTGCTCCTAA CCAACAAATT
GAACCTGCTG TAAATTGGTT ATTAGAAAAT AAGGGAAAAG AATTTTTCTT AGTTGGTTCT
GATTATGTTT TTCCTCGTAC TGCAAATACA ATTATTAAAG AGCAGTTAAA GGCTAAAGGA
GGTACGACTA TTGGTGAAGA TTATTTACCT TTAGGAAATA CAGAAGTTAC TCCAATTATT
ACTAAAATTA AACAAGCTTT ACCTAATGGT GGAGTAATTT TTAATAGTCT TAATGGCGAT
AGTAATGTGG CATTTTTTAA GCAGTTAAAA AGCACTGGTA TTACTCCTGA AAAATACCCT
GTTATGTCGG TGAGTATTGC TGAGGAAGAA GTTAGACAAA TTGGTAAAGA TTTTCTTGTA
GGTCATTATG CTGCTTGGAA TTATTTCCAA ACTGTTGAGA CAGAAACTAA TAAAAAATGG
GTGGAAAGTT TTAAAGCAAA ATATGGTACA GACCGAGTTA CAAATGACCC GATGGAAGCT
GCTTATATTA TGGTTTATCT TTGGAAGCAA GCAGTAGAGA AGGCTGGTAC AGCTGATAAT
TTGGAAGCAG TAAGAATAGC GGCTATCGGA CAAACTTTTG ATGCTCCTGA AGGTTTGGTT
ACGATGAATG TTAATCATCA TATTTCTAAG ACTGTAAGAA TAGGTCAAGT TCGTGATGAT
GGTTTATTTA ATATAGTTTG GTCTACTAAA AAACCCATTG CACCTGTACC CTGGAATCAA
TTTGTGCCAG CAACTAAGGG ATTTAGTTGT GATTGGAGTG ACCCTAACAA AGGCGGTAAA
TTTAAAACTT AA
|
|---|
| Protein sequence | MNKGLKRRKF LIYSSAALGT SIFLKSCSNN NNTTTKDDKI KVGILHSLSG TMAISETTVV
EAEKLAIEEI NAAGGVLGKQ IEAIVEDGAS DWPTFAEKAN KLIDQDQVVT VFGCWTSASR
KSVLPVFESK NHMLWYPVQY EGQECSKNIF YTGAAPNQQI EPAVNWLLEN KGKEFFLVGS
DYVFPRTANT IIKEQLKAKG GTTIGEDYLP LGNTEVTPII TKIKQALPNG GVIFNSLNGD
SNVAFFKQLK STGITPEKYP VMSVSIAEEE VRQIGKDFLV GHYAAWNYFQ TVETETNKKW
VESFKAKYGT DRVTNDPMEA AYIMVYLWKQ AVEKAGTADN LEAVRIAAIG QTFDAPEGLV
TMNVNHHISK TVRIGQVRDD GLFNIVWSTK KPIAPVPWNQ FVPATKGFSC DWSDPNKGGK
FKT
|
|---|
| |