| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_2024 |
|---|
| Symbol | |
|---|
| ID | 3761753 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | + |
|---|
| Start bp | 2234317 |
|---|
| End bp | 2236314 |
|---|
| Gene Length | 1998 bp |
|---|
| Protein Length | 665 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637786773 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_392288 |
|---|
| Protein GI | 78486363 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTCGA TTCGTTACTT TTTTGTGATT GCTTTAGTCA CAATCATTAC CGTTTTTTAT
GGTGTGTTTT TTTATTATTA CCTTGATGAC GAACAAAAAA AGGCCGACCT GATTGTTGAA
AGCATTCGGC ACGATTTGTC TGAAACCGCT TATGTTATTT CCAGTGAAGT GAAAGCACCT
GAATCGATTC GATCTTTTAA ATCGTTTTTA CACAGGAAAG TGGCCAACAA CCCACTTATT
TCAGCGTTGG TCGTCGGCTA TGAAAACAAA GTGATTCTGA CAACGGATCC TTCAATTCAA
TCTTTACCGA CCGATCTGGC GATACAAAAA AAGCTCATGT CTCTGACGCC TAATGCATTA
AAACAGCATC CAATTTTTGA AATGGATATT AATTTTTTTA TCCAAGACAA GCCATCTTAT
TTAAATCTTT ATCTCTATGT GGATCAGACT TATATTCAAA AATATTTTGC GGAAAGCCAA
CACAATTTCT TTCTGTTTTT CGGCCTGGTT CCTTTCTTAA TGCTGATGTT ATTATGGTTT
GTGTTAAGAA AATACGTTAC CTCTCCGCTT GAATTCTTGC GCCAGTATGC CTACTACCAG
TCAAACGTTC CATCCAAATT CAAATTACGT GAACTGGAAT ATATACGTTC GTCCATGGTG
CAAACATTCG ACCGTTTAGA CAACGAAAAA AATGAATTGT ACCGTCAGGC ACGAACCGAT
AATTTATCGG GCTTGGCCAA CCGTAATCAT TTGAATGAAC GTATCAACTG GTTAATTTCA
GAATATTCGC GAACAGGACA GGAATTTGCG GTGCTGTTCA TGGACTTGGA TAACTTTAAA
ACGGTTAACG ATATGCTGGG CCATGAAGTG GGAGATAATT TATTAAAAAA TGTTTCGACC
ATTATTCAAG AAGTGCTGCG TGATTACGAC ATCATCGCCC GTGTTGGCGG AGACGAATTC
GTCATTGTTT TGAACTATTA TCAGTCCAAC TTCGAACTTA CCCATGTCAT TAATCGCATT
CTGGATCGAA TCAGTGAGGT TCACATGGTG GATTCACATC CGGTAAAAGT GTCCGCCAGT
ATTGGTATTG TGTGCTTTCC AAAAGACGGT GACAATATCA GCACCTTGAT GAAGAATGCG
GATATTGCGA TGTACGAGGC TAAGAATTCC GGTAAAAATC GTTTTAAGTT CTTTACCGAA
TCGTTGCACA AGCAAGTCAT CGGTGAGATT CAGCTGGAAC AAGACATGCA ACGTGCTCTC
AAAAACAATG AATTTGAATT ATACTTCCAG CCTAAAATTT GCGTGAACGA TGGAAGCGTT
GTCGGAGCAG AAGCATTGGT GCGTTGGAAC GATCCCAAAA AAGGGCTTGT TCCGCCGAAT
GATTTCATTC CCGCCGCTGA AAAAACCGGC TTAATGGTTC CTTTAGGCCA CTGGGTATTA
AAAACAGCCA TTCAACAACA GGTGACATGG AAAGAGCAAG GACTGGCTGA TTTACAAATC
TCAATAAATT TATCGCCCGT TCAATTGCTG GACACATTAT TCGATCGTAA GCTTCAGGCG
CTCATCAACC AATCGGGAGT GGACCCGACA AAACTCGATA TCGAGATGAC GGAATCGCAG
TTTATGGAAA ACACAGAACA AAACCTGCAC AGCCTTTCGA CCATGCGTAA GCAAGGCATC
AACATTTCAT TGGATGATTT TGGAACGGGC TATTCGTCAT TGGCTTATTT GAAAAAATTT
CCGATTGATA CGTTAAAAAT TGATAAAACA TTTATTGACG ATTACGCCAC AGAATCCGGC
GCTATTTTTA TCGAGACCAT TGTCAAAATT GCCCACACAC TGAACCTGAA TGTCGTTGCA
GAAGGGATTG AACAGGAAGC ACAATTGAAC TATCTGGTTC AAACAGGGTG TGAAACCTAT
CAAGGTTACT ACTGTTCCGC TCCCCTTCCT GTCAGCGAAT TTGAAGCTTT TCTTAAAAGC
CGCACACCGG TTAAATAA
|
|---|
| Protein sequence | MLSIRYFFVI ALVTIITVFY GVFFYYYLDD EQKKADLIVE SIRHDLSETA YVISSEVKAP
ESIRSFKSFL HRKVANNPLI SALVVGYENK VILTTDPSIQ SLPTDLAIQK KLMSLTPNAL
KQHPIFEMDI NFFIQDKPSY LNLYLYVDQT YIQKYFAESQ HNFFLFFGLV PFLMLMLLWF
VLRKYVTSPL EFLRQYAYYQ SNVPSKFKLR ELEYIRSSMV QTFDRLDNEK NELYRQARTD
NLSGLANRNH LNERINWLIS EYSRTGQEFA VLFMDLDNFK TVNDMLGHEV GDNLLKNVST
IIQEVLRDYD IIARVGGDEF VIVLNYYQSN FELTHVINRI LDRISEVHMV DSHPVKVSAS
IGIVCFPKDG DNISTLMKNA DIAMYEAKNS GKNRFKFFTE SLHKQVIGEI QLEQDMQRAL
KNNEFELYFQ PKICVNDGSV VGAEALVRWN DPKKGLVPPN DFIPAAEKTG LMVPLGHWVL
KTAIQQQVTW KEQGLADLQI SINLSPVQLL DTLFDRKLQA LINQSGVDPT KLDIEMTESQ
FMENTEQNLH SLSTMRKQGI NISLDDFGTG YSSLAYLKKF PIDTLKIDKT FIDDYATESG
AIFIETIVKI AHTLNLNVVA EGIEQEAQLN YLVQTGCETY QGYYCSAPLP VSEFEAFLKS
RTPVK
|
|---|
| |