Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tcr_2001 |
Symbol | |
ID | 3762313 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiomicrospira crunogena XCL-2 |
Kingdom | Bacteria |
Replicon accession | NC_007520 |
Strand | - |
Start bp | 2203843 |
End bp | 2204970 |
Gene Length | 1128 bp |
Protein Length | 375 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637786750 |
Product | secretion protein HlyD |
Protein accession | YP_392265 |
Protein GI | 78486340 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.167131 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAGATG TTGTTTTGAA GTGGCGCGGG CATTACGCCT GGCTGCTGTT GATCACCAGT GCGGTGCTTG CTGAAGAGTC GAAGCCTGTT ACCGCTCTTT CTTCTAAGTC GCAAGCCGTT CCTGTCATCG CCTACAGTGT GAAACCCGTT AAAATCCCTG TAAATATTGA GGTATTAGGC AGGCTTCATG CCAAAGAGTC GGTCGACATT ACCGCCAATG TGACGGAGAT TGTTCAAGCC ATTCATTTTA AGGACGGTGA AAAGGTTCGC AAAAGTCAGT TGCTGGTGGA ATTGAATTCG CAAGAAGAGT TGGCCTTGTT GGAAGAAGCG AAAGAGGCGA CCGAGGAAGC GAAGCGTCAA TATGACCGAG TCAAAGAAAT TGAAGGGCGG GGATCGGTTA CCCGTTCTTT AATTGATGAA CGTTATCGTT TGTGGAAGAC CACTGAAGCA AAACGAAAAG TGATTCAAGC ACAGTTGGCG GATAGACGCC TTTACGCCCC GTTTTCCGGC CAAGTCGGGT TCCGCCAGTT GAGTGTGGGG GCTTTGGTGC AAGCCGGAAC GAAAATTGTC AGCTTGGATG ACACCAGTCA AATGAAGTTG GATTTGTTAC TTCCAAGCCA GTATTTATCC AATTTAAAGA TTGGTCAGGC GGTTGAGATT GAAACGGCGT CTTATCCGGG GCGTCGCTTT AAAGGTGTGT TACGCGCCAT TTCCCCGCGT GTTGAAGCGA ATTTGCACAT GATACAGGCC AGAGCACTCA TTGCGAACCC GAAAGCGGAA TTGAAAACCA ACATGATGGT TCAAGCTTTT TTGCATTTGC CGCCGCAAGC CAAATTAATG ATTCCCAACA GTGCCATTTT AATGTTGGGT GACCGTCAAT TTATCTACCG GCTAAAGCCT TCCGATGCCT CTGGAATTTA CCAGTTAGAA AAAGTAGAAA TTGAAACCGG CGACAGAAAA GCCAAACTGA CTCAAATATT AAAAGGGCTT CAGGAAGGTG ATCTCATTGT CAGTCAGGGG TTGATGCGAA TTTCGTTGAG AAAACCTGTG CGTATTAAAG CGATGCAATC CGGGCAGCCT CAAGACGTGC TGCTCAAGAA AGCCGTACCT CAAAGAGAGA CGCCTTAA
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Protein sequence | MLDVVLKWRG HYAWLLLITS AVLAEESKPV TALSSKSQAV PVIAYSVKPV KIPVNIEVLG RLHAKESVDI TANVTEIVQA IHFKDGEKVR KSQLLVELNS QEELALLEEA KEATEEAKRQ YDRVKEIEGR GSVTRSLIDE RYRLWKTTEA KRKVIQAQLA DRRLYAPFSG QVGFRQLSVG ALVQAGTKIV SLDDTSQMKL DLLLPSQYLS NLKIGQAVEI ETASYPGRRF KGVLRAISPR VEANLHMIQA RALIANPKAE LKTNMMVQAF LHLPPQAKLM IPNSAILMLG DRQFIYRLKP SDASGIYQLE KVEIETGDRK AKLTQILKGL QEGDLIVSQG LMRISLRKPV RIKAMQSGQP QDVLLKKAVP QRETP
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