Gene Tcr_1992 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1992 
Symbol 
ID3762304 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand- 
Start bp2190239 
End bp2190880 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content44% 
IMG OID637786741 
Productpyridoxamine 5'-phosphate oxidase 
Protein accessionYP_392256 
Protein GI78486331 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0259] Pyridoxamine-phosphate oxidase 
TIGRFAM ID[TIGR00558] pyridoxamine-phosphate oxidase 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTTTGA ATTTAGCCGA TTTAAGACAA CGTTATTTAA AAGATGGGTT GGATGAAAAT 
AATACCGATG ACAACCCGTT CGTGCAGTTT GAAAAGTGGT TCCACCAGGC ACAGAAGTCA 
GAGCTGTTAG AGCCGAATGC GATGGTGTTG TCTACCGTGA ATGAGGTCAA TCAACCCTCA 
ACAAGAACGG TTTTGCTTAA GCAGTTCAGC GATGACGGAT TCGTCTTCTT TACCAATTAT 
CGGAGCCAGA AGGCAAAAGA CATTCAGCAT AATCCTAAGG TGGCCTTGCA CTTTAATTGG 
CTGGAACTGG AACGTCAGGT CAAGATTCAG GGGGTTGCAG CAAAAATCTC GTTAAAAGAC 
TCCATGCGGT ATTTTGCCAC GCGCCCGAAA GGCAGCCAAA TTGGTGCTTG GGTCAGTCAT 
CAAAGTGAGG TTATCTCATC GAAACAATTA TTGTTGTCAC AGTTTGAAAA GATGAAACAA 
AAATTTCAGT CCGGAGAGAT TCCTTTCCCG GATTTCTGGG GAGGCTATAT GGTGGTTCCC 
CAGCAAATTG AATTTTGGCA AGGAGGAGAT AACCGTTTGC ATGATCGTAT TTGTTATACC 
TTGAAAGACA ACCAGTGGGT CAAACAGCGT CTGGCACCTT AA
 
Protein sequence
MTLNLADLRQ RYLKDGLDEN NTDDNPFVQF EKWFHQAQKS ELLEPNAMVL STVNEVNQPS 
TRTVLLKQFS DDGFVFFTNY RSQKAKDIQH NPKVALHFNW LELERQVKIQ GVAAKISLKD 
SMRYFATRPK GSQIGAWVSH QSEVISSKQL LLSQFEKMKQ KFQSGEIPFP DFWGGYMVVP 
QQIEFWQGGD NRLHDRICYT LKDNQWVKQR LAP