| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1931 |
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| Symbol | |
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| ID | 3761125 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 2116642 |
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| End bp | 2120511 |
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| Gene Length | 3870 bp |
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| Protein Length | 1289 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637786674 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_392195 |
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| Protein GI | 78486270 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0959119 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTATTA GCCTGAAAAA AATGTTGCGT TCCCTGTTGT TTTTGGTCGC GTTGCTCGGT
TATACGGAGC TGGTTTATGC TGTCCCAACG TTTGGCGAGT TTTTTGAACG TCAGGGTGCG
GTGATGCTGA TTATGGACCC CGTAACAGGG AAGATCGTCC GTGCTAATCG GGCGGCCGAA
AACTTCTATG GCTATTCCCG TGACGAATTG AAGAAAATGT CTATCCAAGA CTTAAATACG
TTAACGCCAA AGCAGGTCTC AAAAGAATTG GCGTTGGCAC GAGAAGAAAA ACGTAATTAC
TTTATCTTTC ACCATCGTCT CGCCGGTGGA CAAACTCGCC AGGTGGCGGT TCATTCGATT
CCTTATTCTT TTGATAATCA GTCCTTTTTA GTTTCCACCA TCCATGAGCT GTCGTCCGGC
AGTCACCAAC AACAAGACCT GCAACATTAC CAACAGAATC TAGAAGAATT GTTGCAACTC
CAAGAAACAG AGCTGAAAGA AAGCCAGGAA CGTCAATCTT TAATTCTTGT GTTGGCGGTG
TTTACACAAG CCATTTTGAT TTTGTTTTTG TTTTATGATA TCTCTCGGCG TAAGCAACTG
CAGGCAGAGT TGAAGCAGGT CGCCACCACT TTGACCAATA TTATGGACTC TTCAACCGAA
GTGGCGGTGA TTGCAACGGA TACGGAAGGA GTAATTACCG AGTTTAATTC TGGGGCGGAA
AAGCTTTTAG GGTATTCAGC TCAAGAGCTG GTGGGTAAAG AAACACCATT GAAATTCCAT
TCTGAAAAAG AAATTCAGGC TCGAGCCCAG AGACTGTCTG AAGCCTTAAA ACGACCTGTA
AAAGGGTTTC AGGTCTTTAC AGAAAAATTA AAAGAAGACT CACCGCAAGA TCATGAGTGG
ACCTATGCTC GAAAAGATGG CGTTTTAGTC CCAGTGTCTT TAATTGTGAC TCCTATTTTA
GATGAAAATC ATCAGAAAGT TGGTTACTTA GGGGTGGCAC AAGACGTTAC AGAATTACGC
CGCTCACAAC AAGCCTTAAT CGAAGCACGA AATCAACTTG AAGCGACATT GGATACGATT
CCGGATTTAT TATTTGAAGT TGACAAAGAA GGCTGTATTC TGAATTTTCA CACGGCTGAT
ATTGAAAAAC TTTATTTAAA ACCGGAACAG TTTGTGGGCA AAAGGGTGAA TGAAGTCCTT
CCAGATTCGG TCGGTGATGT TATTTTTCAG GCGATGGCTG AAGCCCTTGA AACAGGACGG
TCACAAGGTT TGGAGTATTC TCTGGCGCAG AATGGAAAAC AATCTTGCTA TGAATTGTCT
GTTTCAACCA AAATCAATCA GAAAAATGAG GTTGTTTCTT TTCTTTTCCT AGCGCGAGAT
GTCACGGCGC GAGTGCAACA GTCAAAAGAG TTGGTCGAAA AAGATGAACG TCTTGAATTG
ATTCTTTCGG CCAGCAAAAT TGGGCAATGG GACTGGGACA TCGAGAGTAA TGTCATGCTT
TGGGACGAGC GCTCTTGCAC GATGTTAGGT TATCCTCCTG AGGCTTTTAA GATGGATTAT
GATAAATGGG CTTCGTTGCT ACACCCCGAT GATGCCTATG TAATGAAGCG GTTAAAAGCA
CACTTGGAAA AAGGCGAAGC TTACAGTGTG GAATATCGGA TACGCTCGGG AGACGACGAC
TGGGTTTGGG TTGAGTCTCA GGGACAAACC ATTGAATCGG ATGCTAAAGG ACGCCCAATT
CGTATGGTTG GTATTTATAT GGACATTACA GATCGTAAAC GCTCAGAAGA TTTATTGGTT
GAAAACGAGG AGCGTTTACG GACAATTTTT GAAATCTTAC CGATTGGGAT TACCTTGACG
GATAGAGAAG GACAGATTGT CGAATGTAAT TCCGCCTCTG AGGTGCTGTT GGGGATTCCT
CGTGAAGAGC ACTTGGCACG AAAATACGAT GCTAAGGAAT GGACTATTTA TCGAGCTGAT
GGCACAGCGA TGCCGTCAGA AGAATACGCT GCTGTGCGTT CATTAACAAA TCAAGAAACA
ATCAAAAATC AAGTTATGAA AGTCTGTCAT TCTGGTGATT GTACTTGGCT GAATGTGAGT
GCGACGCCTT TAAACCATCC AAACTATGGG GTAGTGGTCA CGTATATTGA TATTTCCGAT
AAGCGTCAAG CTGAAGAGCG CTTGAATTTA GCGGCCAGTG TTTTTACCCA TGCACGAGAA
GGAATTATGA TTACCGATAA ACACGCTCGT ATTCTGGACG TAAATAAGGG GTTTACTCAA
ATCACAGGGT ATGAACGAGA AGAAGTGTTG GGGTTGAATC CCAATATTCT TAATTCCGGT
TGTCAGTCGA AAGAGTTCTA TAATTTGATG TGGAAAACGT TGTTTGAAGA AGGGCATTGG
TCTGGTGAGA TCTGGAATCG AAATAAAAAT GGTACCGTTT ACCCGCAAAT GATTACGATT
ACAGCGATCA AGAACAGTGA CGGCATGACG CAAAACTATT TAGCCTTGTT TACTGATATC
ACCTCCTTGA AAGAACAACA AAGACAACTT GAGCACATTG CGCACTATGA TGCACTCACC
CAGTTACCGA ACCGGTCCTT ATTAGCCGAT CGATTACAGC AAGCTATTTT TGCTTCTCAA
CGACACAACT CATTGTTAGC GGTATTGTTT ATTGATTTAG ACGGCTTTAA AAAGGTCAAC
GATCTCCATG GGCATGATGC TGGCGATGAA TTATTGGTTG AACTGTCGAA ACGGATGAAA
AATATTTTGA GAGAGGAAGA TACACTGGCT CGTATTGGGG GTGATGAATT CATTGTTGTG
CTAGTGAATC TGGACGCGCC CAGTGACTGT GAAATGATTT TGAGACGATT GTTGGAGTCA
ACATCGGAAT CGGTTGATAT TGAGGGGGAA GTTGTCAGTG TCAGTGCCAG TATCGGGGTG
ACCTTTTATC CTAAAGATAA TGTCGATGCG GACTTGCTCA TGCGTCATGC CGATCAAGCC
ATGTATCAAG CGAAACAGTC CGGTAAAAAC CGTTATCACT ATTTTGACGT TCAAATGGAT
TCCATGCTGC AGTCTCAAAG CGCCATTCAA AATGAAATAC AAGACGCATT GAATAAGGGC
GAATTTGAAT TGTATTATCA GCCGAAGGTT AATTTAGCTC AGAATATCGT GATCGGTGTG
GAAGCACTGA TTCGCTGGAA CCACCCCAAA AAAGGCCTGT TGGTACCCAT TGAATTCTTA
CCGTTTATTG AAAACCATCC TTTTTCGGTT GAGCTGGATC AGTGGGTGAT GGAGACGGCA
TTAAAGCAGA TGTCTGAATG GCGAGCTCAG TCGCTTGAAA TGAGCATCAG TGTGAATGTC
AGCGCGTATT TTTTACAGCA GAAGAACTTT ATCCAGATTC TGGAACGTTT GCTGAGTCAG
TACTCGGACC TTCCTAAGTT TTCGTTGGAA ATCGAAGTGC TTGAAACCAC GGCTTTGGAA
AACATCAGTA ATATCAGTGA TTTGGTGCAT ATTTGTCGTG ATATGGGCGT CAATTTTGCC
CTGGATGATT TTGGAACCGG GTATTCTTCA TTGATGTATT TAAGGCATTT ACCGGCGCGT
ACCATTAAAA TAGATAAAAG TTTTGTTCGA GATATGTTGG TTGATATGGA TGACAGAGCC
ATTATTGACG GCATCTTAAA ACTCGCTTCG GTCTTTAACC GTGAAGTGAT TGCTGAAGGG
GTTGAAACCG TCGCCCATTT TGAAGCGTTG TTGGATATGG GCTGTGAGCA GGTACAAGGT
TATGGAATTG CTCGGCCTAT GCCGGCCGAC CAGGTATCAG ACTGGGTGTT AAACTGGAAA
GGACATGATG TGTTTTCGGC AGAGCAATGA
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| Protein sequence | MIISLKKMLR SLLFLVALLG YTELVYAVPT FGEFFERQGA VMLIMDPVTG KIVRANRAAE
NFYGYSRDEL KKMSIQDLNT LTPKQVSKEL ALAREEKRNY FIFHHRLAGG QTRQVAVHSI
PYSFDNQSFL VSTIHELSSG SHQQQDLQHY QQNLEELLQL QETELKESQE RQSLILVLAV
FTQAILILFL FYDISRRKQL QAELKQVATT LTNIMDSSTE VAVIATDTEG VITEFNSGAE
KLLGYSAQEL VGKETPLKFH SEKEIQARAQ RLSEALKRPV KGFQVFTEKL KEDSPQDHEW
TYARKDGVLV PVSLIVTPIL DENHQKVGYL GVAQDVTELR RSQQALIEAR NQLEATLDTI
PDLLFEVDKE GCILNFHTAD IEKLYLKPEQ FVGKRVNEVL PDSVGDVIFQ AMAEALETGR
SQGLEYSLAQ NGKQSCYELS VSTKINQKNE VVSFLFLARD VTARVQQSKE LVEKDERLEL
ILSASKIGQW DWDIESNVML WDERSCTMLG YPPEAFKMDY DKWASLLHPD DAYVMKRLKA
HLEKGEAYSV EYRIRSGDDD WVWVESQGQT IESDAKGRPI RMVGIYMDIT DRKRSEDLLV
ENEERLRTIF EILPIGITLT DREGQIVECN SASEVLLGIP REEHLARKYD AKEWTIYRAD
GTAMPSEEYA AVRSLTNQET IKNQVMKVCH SGDCTWLNVS ATPLNHPNYG VVVTYIDISD
KRQAEERLNL AASVFTHARE GIMITDKHAR ILDVNKGFTQ ITGYEREEVL GLNPNILNSG
CQSKEFYNLM WKTLFEEGHW SGEIWNRNKN GTVYPQMITI TAIKNSDGMT QNYLALFTDI
TSLKEQQRQL EHIAHYDALT QLPNRSLLAD RLQQAIFASQ RHNSLLAVLF IDLDGFKKVN
DLHGHDAGDE LLVELSKRMK NILREEDTLA RIGGDEFIVV LVNLDAPSDC EMILRRLLES
TSESVDIEGE VVSVSASIGV TFYPKDNVDA DLLMRHADQA MYQAKQSGKN RYHYFDVQMD
SMLQSQSAIQ NEIQDALNKG EFELYYQPKV NLAQNIVIGV EALIRWNHPK KGLLVPIEFL
PFIENHPFSV ELDQWVMETA LKQMSEWRAQ SLEMSISVNV SAYFLQQKNF IQILERLLSQ
YSDLPKFSLE IEVLETTALE NISNISDLVH ICRDMGVNFA LDDFGTGYSS LMYLRHLPAR
TIKIDKSFVR DMLVDMDDRA IIDGILKLAS VFNREVIAEG VETVAHFEAL LDMGCEQVQG
YGIARPMPAD QVSDWVLNWK GHDVFSAEQ
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