| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1489 |
|---|
| Symbol | |
|---|
| ID | 3761611 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | - |
|---|
| Start bp | 1609864 |
|---|
| End bp | 1610598 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637786220 |
|---|
| Product | RNA methyltransferase TrmH, group 3 |
|---|
| Protein accession | YP_391755 |
|---|
| Protein GI | 78485830 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0566] rRNA methylases |
|---|
| TIGRFAM ID | [TIGR00186] rRNA methylase, putative, group 3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 50 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGCAAC AGCAGTTATA CGGTATCCAC GCGATTGAAA AATTTTTAAA ACAATCGCCT
CACCTGATTT ATTCTTTGAC CTTTCAAAAA GGGCCGGTCA ATAAGCGTGT GCAAAGCTTG
ATGGATCAAG CTAAGCGCAT GGGGATTGCG TATCAGTTGG AACCTAAGTC CTTTTTTAAT
AAGCTTGAAG GGGTTCACCA AGGCGTAGTT GCCACGGTTG CCAAAGAAGC CGATCTGAAT
GAAACCGATT TAAAAGCCTT GTTGGAAGCG GAATCTAACC CGCTTTTTTT GTTTTTAGAC
GAGGTTCAAG ATCCACATAA TTTAGGGGCT ATTTTGAGAA CGGCCGATGC GACAGGGGTG
ACCGCTGTTG TTATTCCAAA GCATAATTCA GTCGGCGTGA ATGCGACTGT TCGCAAGGTC
GCCTGCGGTG CCGCTGAAAC CGTGAAAGTG GTGGTGGTTT CTAACCTGGT TAGAACCATT
AAAGAGCTAC AGCAAGCTGG GTTATGGGTT ACCGGTTTGG CCGGTGAAAC AAACACCACT
CTTTATCAAT TAGATTTCAA AGGGGCTGTT GGTTTGGTGA TGGGTGCAGA AGGTTCAGGG
TTAAGAAAAT TAACTCGCGA AACGTGTGAC CATTTAGCGG CCATACCAAT GGCAGGATCC
ATTGAAAGTT TGAATGTGTC TGTTGCAACG GGCGTTGTGT TGTATGAGGT TTATCGTCAA
AGACTTCAGT CTTGA
|
|---|
| Protein sequence | MKQQQLYGIH AIEKFLKQSP HLIYSLTFQK GPVNKRVQSL MDQAKRMGIA YQLEPKSFFN
KLEGVHQGVV ATVAKEADLN ETDLKALLEA ESNPLFLFLD EVQDPHNLGA ILRTADATGV
TAVVIPKHNS VGVNATVRKV ACGAAETVKV VVVSNLVRTI KELQQAGLWV TGLAGETNTT
LYQLDFKGAV GLVMGAEGSG LRKLTRETCD HLAAIPMAGS IESLNVSVAT GVVLYEVYRQ
RLQS
|
|---|
| |