| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1400 |
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| Symbol | |
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| ID | 3762036 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 1512685 |
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| End bp | 1513860 |
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| Gene Length | 1176 bp |
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| Protein Length | 391 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637786134 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_391669 |
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| Protein GI | 78485744 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.43118 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTTGT CTTCAAATAC GGCTTTTTCT GATTTTGATG TTCAAATGAT GCAAAGAGCA
ATTGATTTGG CTCGAAAAGG ACTTTATTCA ACAAAGCCGA ATCCTGCAGT TGGGTGTGTC
ATAACCCAAC AAGAAAACAT CATTGCTGAA GGGTGGCACC AGAAAGCGGG TGAACCTCAT
GCGGAGCGTG TTGCATTAGC CAATGCGACG GAGTCGGTTA AGGGCGCAAC GGTGTATGTT
ACTTTAGAGC CTTGCTCACA TCATGGCAAA ACGCCGCCTT GTGCGGATGC CTTAGTTGAC
TCTGGGGTGG CTAGAGTGGT GATTGCCATG CAAGATCCTA ATCCGCTTGT GGCCGGAAAT
GGAATTAAAA GATTAGAGCA GGCGGGGATT GTCGTTGACA GTGGTATTTT GTCTGAAGAA
GCTGCGGCTT TAAATAAAGG GTTTGTTTCT GTAATGACAT CGAATAGACC TTTTGTTCGC
TTAAAAGTAG CGAACAGTTT AGATGGCCGA ACCGCGATGG CGAATGGCGA AAGCCAATGG
ATCACCGGGC CGGAAGCACG GCATCAAGTT CATTTGATGC GAGCTCAGCA TGGGGCGATT
GTCACAGGGG TTGGAACCGT TTTAGCGGAT GATCCGAGTT TAAATGTGCG TTTATCGGAA
TCGGTCTTGA CCGAACTGGG CTTAACCTCG GAAAATTGTC ATCCTTTAAG GGTTGTGTTG
GATGCAAATT TGAGCACACC TTTAGACGCC AAAATGCTGT CTTTGCCTGG GCGAACGCTT
TTAATGACCT CGAAAGAAAC GGTCGATCAA AATTTGGATT TGATTGAGCG GTTTTATCAA
AAAGGTGCGG AAGTGATTGC CGTTGAATCG GATGGTGATA AGTTGGACAT TCCGTCCGTG
CTTTCGTATT TGGTGGAAAG TGAAAACATC TATGATGTGA TGGTTGAAGC GGGCGCCATC
GTTGCAGGGG CCTTTATTCA GGCCGATGTG GTTAATGAAT TGCATGTTTT TACCGCGCCT
ATTTTAATGG GCGAGATGGC CAAACCCATG TTTGTTTTGC CAGGCCTGAC CGAAATGGCC
GATAAAAAGG TTTTTGCTTA CCAGTCTGTT CAAGCGCTAG GGGAAGATTT ATACTTGGTG
CTGACACCCA AAATCAACCC CTCAGAGGAT GTTTAA
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| Protein sequence | MSLSSNTAFS DFDVQMMQRA IDLARKGLYS TKPNPAVGCV ITQQENIIAE GWHQKAGEPH
AERVALANAT ESVKGATVYV TLEPCSHHGK TPPCADALVD SGVARVVIAM QDPNPLVAGN
GIKRLEQAGI VVDSGILSEE AAALNKGFVS VMTSNRPFVR LKVANSLDGR TAMANGESQW
ITGPEARHQV HLMRAQHGAI VTGVGTVLAD DPSLNVRLSE SVLTELGLTS ENCHPLRVVL
DANLSTPLDA KMLSLPGRTL LMTSKETVDQ NLDLIERFYQ KGAEVIAVES DGDKLDIPSV
LSYLVESENI YDVMVEAGAI VAGAFIQADV VNELHVFTAP ILMGEMAKPM FVLPGLTEMA
DKKVFAYQSV QALGEDLYLV LTPKINPSED V
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