| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1304 |
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| Symbol | |
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| ID | 3760686 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 1421714 |
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| End bp | 1423054 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637786036 |
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| Product | Type I secretion outer membrane protein, TolC |
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| Protein accession | YP_391573 |
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| Protein GI | 78485648 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000000151154 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTCCTA ATTTAACAGC CGCTTTGATG TTGGTTTCGT CGACAGCATG GTCTGCTCCC
GGGTTAATTG ATATTTATCA GATGGCTGTG TTACATGATG CGAAACTGGC TCAAGCTCGG
GCGACTTACC AAGCAAACCA GCAAGCATTA AACATTGCGC GTTCGCCTTT ATTACCTCAG
ATTGCCGCCA ATGCCAATTA CGTTAAAAAT GACAGTAATG TTGATACCGC TGACGTCACC
ACTCGTGAGT TAGGGGTGAG TATGACGCAG TCGTTGTATC AGCATGATAA TTGGGCGCGT
TATTCGCAAG CAAAATATCA GATGCAAAAG GCTGAATATC AAATCAAGTT TGCAGAACAG
GATTTGATTG TGCGTGTTTC AGATGCGTAT TTTAAGGTGC TGTTGGCACA AGAAGATGTC
AAGCTGGCTC AGGCAAAAGA AGAAGCCGAT AAAACCCAAT GGGAAAGAGC ACAGGCTTCT
GCGGAAGTGG GGCTTGCAAG TAAGACCGAT GTGTTACAGG CTAAATCGAG TTATGACTTA
TCCAAGTCTC AACGCATCAC TTCTGAAAAT AATCTGGATG TGGCCTATGA AGAGCTGATG
AAGCTCACTG GCAAACCGAT CAGTGAATTG AAAGTCATTA AGCTGAATGT TGATTTACCC
GCACAAAATC TAAATATGAG CAAATGGGAA AACATGGCGG AAGAGCAAAA CTTAGATGTT
CTTCAGGTGG AAGAAAGCGC GAATGTGGCC TCAAAAGAAG TTGAAGTGCA AAAGTCCGGC
CATTGGTTTA ATGTCGATTT GAAAGCGCAA TATACCGATC AATCCTATTC TGATTTCAAT
GCCATTTACC CTGGACAATA TTCGGATCGA AATAATTTAA TGGTGGGGGT TTATGCGACC
TTGCCTTTGT ATTCCGGTGG CGGTGTCAGT GCCAAAGTGT CTGAAGCCAG AGCCAATTAT
AAAGCGGCCA CTTTAGGCTT GCGTGATGCG AAAGAGTCTG CTCGTCTGAA TGCTCGTATT
CAGGTGCGCA ATGTCGAGCG CGGTATGGAA TTGGTAATGG CGAACCGAGC CGCCGTGTTG
TCAAACGATG CGTTTTTAGA AGCGGCGGAA GAAGGATATA AAGTCGGCTT AAAGAACTTG
CTGGAAGTTT TGACGGCGAG AACCAATATG TTCCAAGCCA GAAGAAACTT GGCTGAATCG
CTGCATAATG TGGTGTTAAG CCGATTGAAA CTGGAAGCTA CAGTGGGACG TTTGACAGCT
GACAAGTTAG TGCAGTTTGA TAAAGTGCTT TCGAATCCGA CGAATGAAAA GATGCCGAAA
CTTGAAAAGA CATCCTCATA G
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| Protein sequence | MIPNLTAALM LVSSTAWSAP GLIDIYQMAV LHDAKLAQAR ATYQANQQAL NIARSPLLPQ
IAANANYVKN DSNVDTADVT TRELGVSMTQ SLYQHDNWAR YSQAKYQMQK AEYQIKFAEQ
DLIVRVSDAY FKVLLAQEDV KLAQAKEEAD KTQWERAQAS AEVGLASKTD VLQAKSSYDL
SKSQRITSEN NLDVAYEELM KLTGKPISEL KVIKLNVDLP AQNLNMSKWE NMAEEQNLDV
LQVEESANVA SKEVEVQKSG HWFNVDLKAQ YTDQSYSDFN AIYPGQYSDR NNLMVGVYAT
LPLYSGGGVS AKVSEARANY KAATLGLRDA KESARLNARI QVRNVERGME LVMANRAAVL
SNDAFLEAAE EGYKVGLKNL LEVLTARTNM FQARRNLAES LHNVVLSRLK LEATVGRLTA
DKLVQFDKVL SNPTNEKMPK LEKTSS
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