| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1205 |
|---|
| Symbol | |
|---|
| ID | 3760623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | - |
|---|
| Start bp | 1317921 |
|---|
| End bp | 1319423 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637785933 |
|---|
| Product | sigma-54 (RpoN) |
|---|
| Protein accession | YP_391474 |
|---|
| Protein GI | 78485549 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
|---|
| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.917032 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTAA TGCCAGGTTT ACAGATTAAT ATAGGTCAAC AGCTCAAACT GACTCCCCAA
CTGCAACAGT CCATCAAAAT TTTGCAATAC TCTGCACTAG AGGTTCAGCA AACGATTTCG
ACGACGCTCG AGACGAATTT CATGTTAGAG CTCGATGAAG ATGGTTCTGA CGATACTGAG
GAGTTTGATG CTGCCGATTC TGAGTATGAA GAAGAACCGC TTAACGAGAG CAGTGAAACG
GAAACAGAGT TGGATATCGA AGCGTCAGAT ACCCTTTCAG ACGATTTGCA GGCAGATTAT
GAGTGGGAAG AGGTTTACAT TGACTCCCCT ATTAGCAACT CTATTAAATC TAATAATAAT
GATGACTACA CAGCCCCTGA GAATTACACG TCTGCTGAAG TCACGTTGAG TGAGAAGCTG
TACTGGCAGG CGGATATTTA TTCTTGGCCG GACTCTCAAG ATGTCATCGC GTCTTACATT
ATTGATGACA TTGATGATGA AGGTTACTTG AAAACGCCAC TGGAAGACAT TATGGCGTCG
CTTCAGAAAA ATGAGCCAGA TTTAATTGTC AGCCTAGCCG ATATTGAACA AGTGCTTTCC
GTCATTCAGC AGTTTGAACC TACAGGTGTG GGCGCAAGAG ATTTGTCGGA AGGTTTGATT
CTTCAGCTTA AAGCGCTTCC ACAAAACCCT TATGTTGTGA CCGCCATTAA AATCATTGAA
GAGAATTTTG ATTTACTCAG TGTGCGCGAT TACAAGCGGA TTAAAAAAAT CTATTTATTG
AATGATGAGG AGTTAATGGA AGTCATTCAT GTGATTCAGG CTCTCAGTCC GCGTCCGGGA
AGAGAATATT CTTCCACGCA AGGGGAAATT GTCATTCCGG ATCTGAAGCT GTATCGTTCA
AAAGACGGCT TTATTGTGGA ACTGAATCAA GACGCCTTCC CTCGCCTGAC CATTAATTCA
GCTTACATTG ATATGGCCGG CAGTCTGGGA ACGGACAGCT CTGATTCAAA GCAGATAAAA
GAACAATTGA TTGAAGCAAA AGGCTTGATC AAAAGTATTC AAAGTCGAGG TGAAACCTTG
CTGAGAGTCG GTAAATACAT TATCGAAAAA CAAGCACGCT TTTTTGAAGA AGGTGAACAA
GCGATGCAGC CTATGGTATT GCGTGATGTC GCCGAAGCGT TGGAACTGCA TGAGTCAACC
ATCTCTCGTG CAACCAATCA GAAATACATG CAAACCCCGC GAGGCACGTT TGAACTGAAG
TATTTCTTTT CAACAGGGGT GTCTCAATAT GGCAGTGATG ATCAATCCGC GATTGCGATT
AAATCGCACA TTAAGCAGTT GATTGAGGGT GAAGACCCGA ACAAGCCATT GAGTGATAAC
AAATTAATGG CCTTGCTGGA AGAAAAAGAA ATCAATGTGG CGCGTCGAAC GATTGCAAAA
TATCGTGAAG CACTGCACAT CCCCTCTTCC AGTGAACGTA AAAAACTGAA TAAATTTAAA
TAG
|
|---|
| Protein sequence | MALMPGLQIN IGQQLKLTPQ LQQSIKILQY SALEVQQTIS TTLETNFMLE LDEDGSDDTE
EFDAADSEYE EEPLNESSET ETELDIEASD TLSDDLQADY EWEEVYIDSP ISNSIKSNNN
DDYTAPENYT SAEVTLSEKL YWQADIYSWP DSQDVIASYI IDDIDDEGYL KTPLEDIMAS
LQKNEPDLIV SLADIEQVLS VIQQFEPTGV GARDLSEGLI LQLKALPQNP YVVTAIKIIE
ENFDLLSVRD YKRIKKIYLL NDEELMEVIH VIQALSPRPG REYSSTQGEI VIPDLKLYRS
KDGFIVELNQ DAFPRLTINS AYIDMAGSLG TDSSDSKQIK EQLIEAKGLI KSIQSRGETL
LRVGKYIIEK QARFFEEGEQ AMQPMVLRDV AEALELHEST ISRATNQKYM QTPRGTFELK
YFFSTGVSQY GSDDQSAIAI KSHIKQLIEG EDPNKPLSDN KLMALLEEKE INVARRTIAK
YREALHIPSS SERKKLNKFK
|
|---|
| |