Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tcr_1168 |
Symbol | |
ID | 3760655 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiomicrospira crunogena XCL-2 |
Kingdom | Bacteria |
Replicon accession | NC_007520 |
Strand | - |
Start bp | 1270475 |
End bp | 1273954 |
Gene Length | 3480 bp |
Protein Length | 1159 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637785892 |
Product | transcription-repair coupling factor |
Protein accession | YP_391437 |
Protein GI | 78485512 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.507558 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAAAAA ATCATTCGCC TTATGCCTTA TTAGAAGCTG ACCAAATTTC TCTCAAAGGT CAAACTTCGA CTTGGTCTTT AAATAATATT TCTGAAAGCG CTCTCGCCTT GATTGAAAAG GCGCAAAATG CACCAGGCCT GGCGGTTTTA TTGACTGAAA ATATGGCCGA AGCCAATAAA TACAGTGAAT TGTTACGCTT TTTTGCCGAG ACAGATTACC CTATTCTAAG CTTTCCTGAA TGGGAAACCT TACCTTATGA CCAGTTTTCG CCTCATCAAG ATATTATTTC ACAACGTCTG AAAACCTTAT ATCAGCTGCC CAGCACCAAA CAAGGGTTGC TGATTCTGCC TGTCAGCACC TTGATACAAA AAGTGGTTCC CCACCAATTT ATTGAAAAAT ACACTTTTTT ATTACAGTGT GGTGAAACGG TTGATATCGA CGCTTTTACT CGCCAGCTGG AATCCAGTGG CTACCAGCGC GTCAGTCAGG TTATGGAGCA TGGTGAATTT GCAGTCCGCG GTTCCATTAT CGATTTATAC CCGATGGGCA GTCGAACACC CTATCGGTTA GACTTGTTTG ATGATGAGAT CGAAACCATC CGAAGTTTTG ATCCCGAAAC ACAACGCAGT GTTGATTCGA TTGAGCAAAT CGAATTATTA CCCGCTAAAG AATATGATTT GACGCCTGAA GGGATCAGTC TTTTTCGTCA AAACTTCCGC AGCCACTTTG GAGATGATGC TCGCAATAGC CAGCTTTATC GTTCCGTTAA GGATGGACAG ACCGTTGATG GTTTAGAATA TTATCTATCT TTGTTTCACT CCAATATTGC CACTTTCTTT GACTATCTGC CGTCTGATTG CCTTTTCTTT AACCAAGGCG ACCTTCAGGC ACAGATTCGA CAAAACTGGC AGGACTATCA AGAACGTTAC GACATTGCGC AACATAATCC TGATTACCCG GTGTTAGTAC CTTCAGAACT GATTTTATCT GAAAATGAAA CCTTCTCTGC CTTAAAGGCC TTTCACCGTA TACAGTTTTC TCTGCAACCA ACGGACAAAG CGACCGCAAC GTTTAAAACG TATCCCTTAC CGGACTTAAC GATTCAGTCA AACAGTGAAT ACCCGTTGGC AAAGTTGAAT GCGTTTCTAG ATCAATACGC ATCGGAACAT AACGGCCGTA TCCTTTATTG TGCTGAGTCC ACTGGTCGGC GTGAAACGTT ATTAACGATT TTATCCAAAC ACCCTCAGTT CAAAGGTAAA TTACCCAAGC AAATCGACAG CTGGGGTGAA TTTAAAACGT CAAAAGCACC CTACGAAATC ATTGTCGGCC CTCTGGAAGA TTCGGTTTAT ACCGATGATT TCTGCATTCT CTCGGAATCC CAAATTTTCG GACAAACGGT CATTCAAAAA CGCCGTCGTA AGCGTAAACA TTCTGAGTTT GACAACGCAA TTTCAAACTT AATTGAACTG GATTTAGGGC AACCTATCGT CCACTTTGAC CATGGGGTCG GTCGTTTTCT AGGGTTAGAG ACGATGACTA TACAAGGCGA AGAACATGAG TTTCTCATGA TTCAATATGC AGGAGACGCA AAGCTCTATG TGCCAGTCAC CTCTTTACAC CTGATAAGCC GCTACACCGG TGCCAGCGCA GAAACCGCTC CCTTGCACAA GCTCGGTTCC GATAAATGGG ATAAAGCCAA ACGTAAGGCT GCTGAAAAAG TTCGCGATGT TGCAGCCGAA CTGCTCGACA TTTATGCCCA GCGTGAAGCT CGCCCCGGCT ATGCGTTTCA AACAGACGAA GAAGCGTATG CTCGTTTTCG TGCAGGTTTT CCTTTTGAAG AAACGCCGGA TCAGGAAGCG GCCATTGAAG CCGTGCTGTC TGATATGAAA TCGGACAAAC CAATGGACCG CCTCATTTGC GGAGATGTTG GGTTTGGTAA AACAGAAGTT GCGATGCGAG CCGCTTTTGT AGCGGCTTAT TCTGGTAAGC AAGTTGCTGT TTTGGTGCCC ACCACCCTGT TGTCACAACA ACATCTGGAA AACTTTAAAA ACCGGTTTGC TGATTGGCCG ATTCGAATCG AAGGGTTGTC ACGCTTTCAA AGTGCAAAAG AAACCAAGCA GATTGTCGAA GCGGTGAAAA ACAATCAAGT CGATATCATT ATCGGCACCC ATAAAATCAT TCAGAACGAC ATGCAATTCG GTAATCTGGG GCTTATCATC ATTGACGAAG AACATCGTTT TGGGGTGCGT CAGAAAGAAC AGCTTAAAAA ACTTCGTACC GAAGTGGATG TGATGACCAT GACGGCCACT CCTATTCCCC GAACCTTGAA TATGGCAATG AACGATTTAC GTGACTTGTC CATTATCGCG ACTGCGCCGG CTAAACGTTT GGCCGTGCAA ACCTTTGTGC AAGATTGGAA CCCGGATGTT GTCAAAGAAG CTTGCCTTCG AGAAATTCGT CGTGGTGGAC AAATTTACCT GCTCTTTAAT AACGTCGACA AAATTGAACA GATGGCCGAA GAGATACAAG CATTGCTGCC TGAAGCCAAG GTTGAAACGG CACATGGTCA AATGCATGAA CGAGAGTTGG AACAAGTCAT GCAGAACTTC TACCATCGTC GATTTAATAT TCTGGTGTGT ACCACGATTA TCGAAACAGG CATCGACATT CCAACAGCAA ACACCATTTT AATTCATCGA GCCGACAAAT TCGGATTAGC GCAATTGCAT CAGTTGCGCG GTCGCGTTGG GCGCTCTCAT CATAAAGCGT ATGCTTACCT CTTTACCGCT GGCAAAGCAC TGATGACCAA AGATGCGGAA AAACGATTAA CCGCAATTGC AAAACATGAC ACCTTGGGCG CAGGCTTCAT GCTGGCGAGT CATGATTTAG AAATTCGTGG GGCCGGAGAG CTGCTTGGGG ATGGTCAATC AGGCCAAATT CATGAAATTG GCTTTGGGCT TTATTCAGAT TTACTGGATC GTGCTGTTCG AGCTTTGAAA TCAGGCAAGC AACCTGAGTT AGATGCTAAA TTGCATACCG GTGCCGAAGT TGAGCTAGGC ATGCCGGCCC TTATCCCGGA AGATTATTTA CCGGATATCC ATACTCGACT GGTTTTCTAT AAACGTATCG CCAGTGCTGA AGATAATAAT GCCTTGCAAG AACTGGAAGT GGAAATGATT GACCGTTTTG GGTTATTGCC GGATCAGGTT AAAAACCTGT TTGAAACAAC CCGTGTGAAA TTGGTTATTG ACGCATTAAA TCTGAAAAAA GTGGAAGCCA GCGAAGCAAT GATTCGCATC CAATTTGGTT CCAACCCTAA CATCAACCCA CTGGAATTGA TTAAATTGAT TCAAAATCAT CCTAAGAACT ATCAGTTAAA AGGGCAAATT GAATTAAAAT ATTTCGATAC AATGCTAGAG ATGAAACAAC GAATTCAAGC TATCGAATTA ATCGTAGCCA CTATTTCAAA TAAGGAATAA
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Protein sequence | MSKNHSPYAL LEADQISLKG QTSTWSLNNI SESALALIEK AQNAPGLAVL LTENMAEANK YSELLRFFAE TDYPILSFPE WETLPYDQFS PHQDIISQRL KTLYQLPSTK QGLLILPVST LIQKVVPHQF IEKYTFLLQC GETVDIDAFT RQLESSGYQR VSQVMEHGEF AVRGSIIDLY PMGSRTPYRL DLFDDEIETI RSFDPETQRS VDSIEQIELL PAKEYDLTPE GISLFRQNFR SHFGDDARNS QLYRSVKDGQ TVDGLEYYLS LFHSNIATFF DYLPSDCLFF NQGDLQAQIR QNWQDYQERY DIAQHNPDYP VLVPSELILS ENETFSALKA FHRIQFSLQP TDKATATFKT YPLPDLTIQS NSEYPLAKLN AFLDQYASEH NGRILYCAES TGRRETLLTI LSKHPQFKGK LPKQIDSWGE FKTSKAPYEI IVGPLEDSVY TDDFCILSES QIFGQTVIQK RRRKRKHSEF DNAISNLIEL DLGQPIVHFD HGVGRFLGLE TMTIQGEEHE FLMIQYAGDA KLYVPVTSLH LISRYTGASA ETAPLHKLGS DKWDKAKRKA AEKVRDVAAE LLDIYAQREA RPGYAFQTDE EAYARFRAGF PFEETPDQEA AIEAVLSDMK SDKPMDRLIC GDVGFGKTEV AMRAAFVAAY SGKQVAVLVP TTLLSQQHLE NFKNRFADWP IRIEGLSRFQ SAKETKQIVE AVKNNQVDII IGTHKIIQND MQFGNLGLII IDEEHRFGVR QKEQLKKLRT EVDVMTMTAT PIPRTLNMAM NDLRDLSIIA TAPAKRLAVQ TFVQDWNPDV VKEACLREIR RGGQIYLLFN NVDKIEQMAE EIQALLPEAK VETAHGQMHE RELEQVMQNF YHRRFNILVC TTIIETGIDI PTANTILIHR ADKFGLAQLH QLRGRVGRSH HKAYAYLFTA GKALMTKDAE KRLTAIAKHD TLGAGFMLAS HDLEIRGAGE LLGDGQSGQI HEIGFGLYSD LLDRAVRALK SGKQPELDAK LHTGAEVELG MPALIPEDYL PDIHTRLVFY KRIASAEDNN ALQELEVEMI DRFGLLPDQV KNLFETTRVK LVIDALNLKK VEASEAMIRI QFGSNPNINP LELIKLIQNH PKNYQLKGQI ELKYFDTMLE MKQRIQAIEL IVATISNKE
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