| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0441 |
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| Symbol | |
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| ID | 3761468 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 493889 |
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| End bp | 494851 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637785152 |
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| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
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| Protein accession | YP_390711 |
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| Protein GI | 78484786 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATGACGT TATTTGACTC TAGTACCCCC ACGATTGCCC TGGCACCCAT GGCAGGCATT
ACCGATCGGG TTTATCGTGA CATTTGTCGA GAATCCGGTG CCAGTTATGC CGTGTCAGAA
ATGGTCGCTT CCAAAAAGCA GTTACGCGAA TCGGCGAAAT CGTCAACCCG CCATGCGGAT
AAAACGGAAA CGTCTCCTCG CATTGTCCAG TTGCTTGGAA CCCACCCAGA AGAATTGGTG
GATGCAGCGT TATGGCAACA ATCCCAGGGG GCCGACATCA TCGATCTCAA CATGGGATGC
CCAGCAAAAA AAGTGTGCGA TGTGGCCGCA GGTTCTGCTT TAATGGGCCA ACCTGAACGG
GTTGCTGATA TTTTTAAAAG TCTGACCGAG GCCATTGACC TTCCGGTTAC GGTTAAAATT
CGAACTGGAA CCGATGTGGA TAACATCAAT GCCGTCGAAA TCGCCAAACT GGCGCAAGAA
TTGGGCCTGA AAGCCATCAC TATTCATGGA CGCACCCGCG CCGATAAATT TAATGGCCAG
GCCGAATATG ATACCATCAA AGCCGTCAAA CAGGCGGTTG ACATCCCAGT TATTGCAAAC
GGTGATATTT GCAGCCCAAA AGAGGCTCAA TTTGTATTAA AATATACCGG TTCAGATGGC
ATTATGATTG GTCGAGCCGC CCAAGGATAT CCTTGGATTT TCAGAGAGAT AGCACACTTT
TTAAAGACTG GGGATTGTTT ACCCTCCCCG AGTTTTGCTG AATTCCAGCA AGTGATGACC
CGACACTTTT CAGAACTGGA AATACTTTAT GGCGAGCATT TAGGCCATAA AATCGCTCGA
AAACATCTGG GCTGGTATAG CCAATACCTT CCGAACGGTA CAGAGCTAAG AAAAAGATTT
AATCGGCTTG AGAATACTCA GGCACAACTC AACTTAATCA ACCATTACTT TGATACTTTA
TGA
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| Protein sequence | MMTLFDSSTP TIALAPMAGI TDRVYRDICR ESGASYAVSE MVASKKQLRE SAKSSTRHAD
KTETSPRIVQ LLGTHPEELV DAALWQQSQG ADIIDLNMGC PAKKVCDVAA GSALMGQPER
VADIFKSLTE AIDLPVTVKI RTGTDVDNIN AVEIAKLAQE LGLKAITIHG RTRADKFNGQ
AEYDTIKAVK QAVDIPVIAN GDICSPKEAQ FVLKYTGSDG IMIGRAAQGY PWIFREIAHF
LKTGDCLPSP SFAEFQQVMT RHFSELEILY GEHLGHKIAR KHLGWYSQYL PNGTELRKRF
NRLENTQAQL NLINHYFDTL
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