| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0346 |
|---|
| Symbol | |
|---|
| ID | 3762371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | + |
|---|
| Start bp | 393950 |
|---|
| End bp | 395584 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637785055 |
|---|
| Product | chaperonin Cpn60/TCP-1 |
|---|
| Protein accession | YP_390616 |
|---|
| Protein GI | 78484691 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
|---|
| TIGRFAM ID | [TIGR02348] chaperonin GroL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000000118378 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAAG ACGTAAGATT AGGTTTAGAC GCCCGCGAAA AGATGGTTGA AGGGATTAAT
GTCCTAGCGG ATGCAGTAAA AGTAACTTTA GGGCCTAAAG GGCGTAATGT TGTTCTAGAA
AAATCATTTG GTGCACCAAC GGTCACTAAA GACGGTGTTT CGGTAGCTCG TGAAATTGAA
CTGGAAGATA AGTTCATGAA CATGGGTGCG CAAATGGTTA AAGAAGTCTC TTCACAAACC
AATGATGTGG CAGGTGACGG TACAACAACA GCGACGGTTC TAGCACAGTC TATCGTCCGC
GAAGGGATGA AGTCGGTTGC AGCAGGTATG AACCCGATGG ATCTTAACCG TGGTATCCAC
AAAGCGGTTG AAGCGGTAGT AAAAGAAATT CAAAAAATGT CAGTTCCTTG TACAACGACA
GAATCGATTG CACAGGTCGG TACGATTTCT GCCAACTCTG ATTCGGCTGT TGGGAAAATG
ATTGCTGAAG CCATGGAGAA AGTATCAACA GAAGGTGTAA TTACTGTTGA AGAAGGGTCT
TCTTTGCATG ATGAGCTTGT TGTTGTTGAA GGGATGGAAT TTGATCGTGG TTACTTATCA
CCGTACTTCG TGACAAACCA AGAGAAAATG GTGGCCGAAT TAGACAACCC ATACATTTTG
TTACACGATA AAAAGATTTC AAACATCCGT GATTTGTTAC CAACATTGGA AGCGGTTTCA
AAAGCCGGTC GTCCATTATT GATCATCGCG GAAGATGTTG ATGGTGAAGC GTTGGCGACA
CTGGTTATCA ACAACATGCG CGGTATCGTA AAGGCGACCG CCATTAAAGC ACCTGGTTTC
GGTGAGCGTC GTAAAGCTAT GCTTCAAGAT ATGGCCGTTC TAACAGGTGG TACGGTTATT
TCTGAAGAAG TTGGTTTAAC GCTTGAGAAT GTAACTTTAG ACATGCTGGG TGAAACGAAG
TCGGCCGTTG TTGGTAAAGA CAGCACTAAA TTGATTGACG GTGCAGGTGC GAAAGCAGAT
ATCGAAGCAC GTTGTGCTCA AATTCGCTCT CAAGCTGAAA ACACAACGTC TGAATACGAT
TCAGAAAAAC TTCAAGAGCG TTTGGCTAAG TTGGCAGGCG GTGTGGCTGT TATCAAGCTA
GGTGCGGCGA CTGAAGTTGA AATGAAAGAG AAGAAAGACC GTGTGGATGA TGCATTGCAT
GCGACTCGTG CCGCGGTTCA AGAAGGGATT GTTGCCGGTG GTGGTGTTGC CTTGGTTCGT
GCACGCTCAA AAGTCAAAGT CAAAGGTGAC AACGACGAGC AGCAATTAGG GATTGAGATT
GCCTTGCGTG CAATGGAAGA ACCAATGCGT CAAATTGCAG CAAACTGCGG TTTAGAAGGT
TCGGTCATTG TGAACAAGGT GATGGAGTCA AAAGACAACA TGGGCTTCGA TGCCGCTTCT
GAAACGTATG TTGATATGAT TAAAGCCGGT ATCATTGATC CAGCTAAAGT AACGCGTTCT
GCATTGCAAA ATGCGGCTTC TGTTGCCGGT CTAGTCTTGA CAACAGGTGC AGCGATTGCA
GATCTTCCTT CAAAAGACGG TGCATCAGCT GATGCGGCCG CTGGTGGAAT GGGAGGCATG
GGCGGAATGA TGTAA
|
|---|
| Protein sequence | MAKDVRLGLD AREKMVEGIN VLADAVKVTL GPKGRNVVLE KSFGAPTVTK DGVSVAREIE
LEDKFMNMGA QMVKEVSSQT NDVAGDGTTT ATVLAQSIVR EGMKSVAAGM NPMDLNRGIH
KAVEAVVKEI QKMSVPCTTT ESIAQVGTIS ANSDSAVGKM IAEAMEKVST EGVITVEEGS
SLHDELVVVE GMEFDRGYLS PYFVTNQEKM VAELDNPYIL LHDKKISNIR DLLPTLEAVS
KAGRPLLIIA EDVDGEALAT LVINNMRGIV KATAIKAPGF GERRKAMLQD MAVLTGGTVI
SEEVGLTLEN VTLDMLGETK SAVVGKDSTK LIDGAGAKAD IEARCAQIRS QAENTTSEYD
SEKLQERLAK LAGGVAVIKL GAATEVEMKE KKDRVDDALH ATRAAVQEGI VAGGGVALVR
ARSKVKVKGD NDEQQLGIEI ALRAMEEPMR QIAANCGLEG SVIVNKVMES KDNMGFDAAS
ETYVDMIKAG IIDPAKVTRS ALQNAASVAG LVLTTGAAIA DLPSKDGASA DAAAGGMGGM
GGMM
|
|---|
| |