Gene Tcr_0307 details

Gene Information

• Locus tag: Tcr_0307
• Symbol: rplE
• ID: 3762568
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thiomicrospira crunogena XCL-2
• Kingdom: Bacteria
• Replicon accession: NC_007520
• Strand: +
• Start bp: 352329
• End bp: 352871
• Gene Length: 543 bp
• Protein Length: 180 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 637785016
• Product: 50S ribosomal protein L5
• Protein accession: YP_390577
• Protein GI: 78484652
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0094] Ribosomal protein L5

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.000563605
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAGAT TACAAAAAAT TTATAATGAT CAAGTTGTTC CGGCATTAGT CGAAAAATTT 
GGTTATAAGT CAGTAATGCA AGCTCCAAAA CTCACAAAGA TTACGATCAA TATGGGTGTT 
GGTGAAGCGA TTGGTGACAA GAAGATACTT GATAATGCAG TGTCAGACAT GGAAGCGATT 
ACAGGGCAAA AACCTGTTAA GACGCTTGCA AGACGCTCTG TTGCAAGTTT TAAAGTACGT 
GATGGATATC CACTGGGTTG TAAAGTTACA CTTCGTGGCG CCAAAATGTA TGAGTTTTTG 
GATAGATTGA TTAATGTTGC TTTGCCACGT GTTCGTGATT TCCAAGGTGT TAAAGGGAAT 
GCGTTTGATG GTCGAGGTAA TTACAATTTA GGTGTGAAAG AGCAAATCAT TTTCCCTGAA 
ATTGAATTTG AAAAGGTTGA TAAAATTCGT GGAATGGACA TCAACTTTGC AACGACTGCT 
TCAACGAATG AAGAAGCAAA AGCTCTTTTA GAAGCCTTTA ATTTTCCATT TAAAAAGCAA 
TAG 

 

Protein sequence

MARLQKIYND QVVPALVEKF GYKSVMQAPK LTKITINMGV GEAIGDKKIL DNAVSDMEAI 
TGQKPVKTLA RRSVASFKVR DGYPLGCKVT LRGAKMYEFL DRLINVALPR VRDFQGVKGN 
AFDGRGNYNL GVKEQIIFPE IEFEKVDKIR GMDINFATTA STNEEAKALL EAFNFPFKKQ