| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0289 |
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| Symbol | |
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| ID | 3762550 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 337709 |
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| End bp | 341935 |
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| Gene Length | 4227 bp |
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| Protein Length | 1408 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637784998 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_390559 |
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| Protein GI | 78484634 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000201644 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGATT TATTAGGATT TCTAAAAAAA CAAAATGTAT CAAGTGATTT CGATACGATA
AAAGTTACTC TTGCTTCTCC AGAAAAGATT CGATCGTGGT CTTTTGGTGA GGTTAAAAAG
CCTGAGACCA TTAACTATCG TACCTTTAAA CCTGAGCGTG ATGGATTGTT CTGTGCCAAA
ATTTTTGGTC CGATTCGTGA TTACGAATGT CTGTGTGGTA AATACAAACG TCTAAAGCAC
CGTGGTGTTA TTTGTGAAAA GTGTGGCGTT GAAGTTACAC AGTCTAAAGT ACGTCGTGAG
CGTATGGGGC ATATCGATCT AGCTACGTCA GTTGCTCATA TTTGGTTTCT AAAATCATTG
CCTTCAAGAA TCGGTTTAAT GTTAGATATG ACATTAAAAG AAATTGAAGC TGTGCTGTAT
TTTGAAGCCT TTATGGTTGT TGATCCAGGT TTGACGCCGC TTGAACCATG GCAGTTACTG
AGTGAAGAAG AATACTTGGA TGCGATGGAT GAGTATGGTG ATGAATTTGA AGCCCAGATG
GGTGCTGAAG CGATTAAGAA AATGCTTCAA GCGATTGATC TTGATGCGGA AGCAACACGT
TTGCGTGAAG AAATGGAAGC GACAAGTTCA GAAACCAAGC AGAAGAAGAT TTCTAAGCGT
CTAAAATTGA TTGATTCATT TGTTCAGTCA GGAAATAAGC CTGAATGGAT GATTTTGGAT
GTGCTTCCTG TATTACCTCC AGAGCTAAGA CCATTAGTTC CTTTGGACGG TGGTCGTTTT
GCGACGTCTG ACTTGAATGA TTTATACCGT CGAGTAATTA ACCGTAACAA TCGTTTAAAG
AGATTGTTAG ATCTTATGGC GCCTGACATT ATTGTTCGTA ACGAAAAACG TATGCTTCAA
GAATCTGTTG ATTCGATGCT TGATAACGGA CGTCGTGGAA GAGCTGTTAC AGGAACAAAT
AAGCGTCAAT TAAAATCATT AGCCGACATG ATCAAAGGGA AGCAAGGTCG TTTCCGTCAA
AACTTACTTG GTAAGCGTGT TGATTACTCT GGTCGTTCAG TCATTGTTGT TGGCCCGTCA
TTGCGTCTGC ATCAGTGTGG TCTGCCAAAG AAAATGGCTT TGGAATTGTT TAAGCCTTTT
ATCTTTAGTA AGCTTCAAAA GCGTGGTCTG GCTACGACGA TTAAAGCCGC TAAAAAGATG
GTTGAGCAAG GATTGCCAGA AGTGTGGGAT GTTTTGGATG AAGTCATTCG CGAGCATCCG
GTTCTATTAA ACCGTGCACC GACACTTCAC AGACTTGGGA TTCAAGCATT TGAACCGGTT
TTGATTGAAG GGAAAGCGAT TAATTTGCAC CCATTGGTTT GTTCTGCCTT TAACGCGGAT
TTCGATGGTG ACCAGATGGC TGTTCACGTG CCATTGTCAC TAGAAGCGCA ACTTGAAGCC
AGAACCTTGA TGATGTCAAC CAATAATTTG TTGTCACCTG CAAATGGTGA TCCTATTATT
GTTCCATCTC AAGATGTTGT TCTGGGTCTT TACTATATTA CGCGTGAAAA AATAAACGCA
AAAGGTGAAG GGAAAGCTTT TTCTAACTGG ATGGAAGTGC AGCGTGCATT AGATGCGAAA
GCTGTTCACG TTCACACTAA GATTAAATTA AAGATTGAAG AAACGGTTAT AGACGATGCC
GGGGTTGAGA CTGTTAAAAA GGGTATTGTT GATACCACTG TAGGGCGCGC GCTTTTATTG
AGAATTCTTC CTAAAGGTCT TGGTTTTGAC TTATTGAATC TGAACTTGAC GAAAAAGAAT
ATCTCTAAGG CATTGAATGC TTGTTATCGT ATTCTAGGGC CTAAAGAAAC CGTAATCTTT
GCTGACCAAC TCATGTACGC AGGGTTTAAA TGGTCAACAC TTGCTGGTTT GTCTTTCTGT
TCAGATGATA TGCTTATTCC TGACGATAAA GCACCGATTA TTGAGCGTGC TGATGAGCAG
GTAACAGAGA TTCAAAGACA GTTTGCACAA GGGTTAGTAA CCGAAGGTGA GCGTTATAAT
AAAGTCGTTG ATATTTGGTC TCATACTAAT GAGTTAGTCA CAAAGTCAAT GATGGAAGAG
CTTCAGTATG AAACGGTTAC CGATGCGGAA GGAAATGAAG TTAAACAGAC TTCCTTTAAC
TCAGTTTATA TGATGGCCGA TTCTGGAGCA CGTGGGTCTG TTGCTCAGAT GCGTCAGTTA
GGTGGTATGC GTGGTCTAAT GGCTAAGCCG GATGGTTCTA TCATTGAAAC GCCAATCACA
GCAAACTTCC GTGAAGGGTT GAATGTACTT CAGTACTTTA TCTCTACACA TGGTGCTCGT
AAAGGTTTGG CAGATACGGC ATTGAAAACT GCAAACTCTG GTTATTTAAC ACGTCGATTA
GTTGACGTTG CGCAGGATGT GGTTGTAACC GAGCCTGATT GTGGAACAGA TGCAAGTATT
ACAATGGCGC CGCACGTTGA GGGTGGTGAG GTTGTAGAAG AGCTTAAAGA GCGAATTCTA
GGCCGTGTTG TAGCAGAAGA TGTTGCTGGT CTAGATGGTG AAATAATTGT AGAAAAAGGC
ACTTTGCTGG ATGAACGCCT AGTAAATCTG ATTGATGAAT CTGGGGTTGA TGCTGTTAAA
GTGCATTCTC CGATTACGTG CGAAACAAAG TTTGGTATTT GTCAGAAGTG TTACGGCCGT
GATTTGGCGC GTGGTCACAT GGTAAACCTG GGTGAAGCGG TTGGTGTTAT GGCTGCACAA
TCGATTGGTG AGCCTGGTAC TCAGTTGACT ATGCGTACGT TCCATATTGG TGGTACGGCG
TCTGCTTCAA CGGCTCAAAG CCAGGTTGAA GTGAAGCATG AAGGTAAAGT TAAGTTTGAT
AACTTAAAAA CCATTAAAAA CACCGAGAAC CAGGTTGTTG TGACTTCGCG TTCAGGGGAA
ATTTCTATCC TGGATAGCTT AGGAAGAGAA AAAGAAAGAT ATAAGATCCC TTACGGCTCA
ATGCTGAATG TTAAAGACGG TATTGATGTT ACTTCTGGTA ATGTTTTAGC GACATGGGAT
GCGCATACGC ATCCGATTAT TACTGAAGCA GAAGGTATTA TTCAGTTTGG TAATTTTGAT
GGTGCTGTAG AAGAGCATGT AGATGAGTTG ACAGGGTTAA CAACTCATGT TGTTAAGAGC
TCGAAAGAGC GTTCTTCAGC GACCAAAGAA CTAAGACCTT ATATTCAGTT AGTGGATGAT
AAAGGTGAGG TTGTGCCATT CCCAGGTACA CAAACACCAG CAATGTATTA CTTACCTGAA
AACTCAGTAG TGGTCGTTAA CCAGTCTGAT AAAGTTGGTG CAGGTGATAT TTTGGCAAGA
ATTCCACAGG AATCTTCGAA AACCAAAGAT ATCACAGGGG GGCTTCCTCG AGTGGCTGAC
TTGTTTGAGG CAAGAGTACC TAAAGAACCT GCAATCATGG CTGAAGTATC TGGTGTGGTT
GGTTTTGGTA AAGAAACTAA AGGTAAACAG CGTTTAGTGA TTACTCAAGA CAGTGGTGAA
CAGCACGAAA CGTTAATTCC AAAATGGCGT TCAGTTGATG TGTTTGAAGG TGAACGAGTT
GAGAAAGGGG ATGTCGTCGT TGATGGTAAC CCTAACCCGC ATGATATTTT AAGGTTGTTG
GGTGTTGAGC GACTCACTAA ATACATCGTG GATGAAGTTC AGGATGTATA TCGTTTGCAA
GGTGTAAGAA TCAATGATAA GCACATTGAA ACGGTTGTTC GTCAGATGTT AAGAAAAGTT
GAAGTTCGTT CAACAGGTGA TACAAGCTTG ATTAAAGGTG AGCAGGCTGA ATTTGCAAGA
GTCCTTGAAA TGAACGAAAA AGTTTCTGAT GAAGGTTCTG TAGAAGCGTC TTATCAAAGA
GTATTGTTGG GTATTACCAA GGCTTCACTG GCAACTGAGT CCTTTATTTC CGCTGCTTCG
TTCCAGGAGA CGACTCGTGT TCTAACTGAA GCTGCAGTAA GTGGTAAAGA AGATAAGCTG
GTTGGGTTGA AAGAAAACGT TATTGTTGGA CGTTTGATTC CAGCTGGAAC AGGTTTTGCC
TATCATAAGG CTCGCAAGGA AGCGAGTGAA AAAACTCAAC GTGAATTGGC CGCCTTCATG
AATACGGATG ATGAAAGCGC TGTTCAAGAA GAAGTGGTTG AAGAAACTAT TTCTGTAACA
GAGAGTGTTG AGCAAACAAC TGAATGA
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| Protein sequence | MKDLLGFLKK QNVSSDFDTI KVTLASPEKI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPIRDYEC LCGKYKRLKH RGVICEKCGV EVTQSKVRRE RMGHIDLATS VAHIWFLKSL
PSRIGLMLDM TLKEIEAVLY FEAFMVVDPG LTPLEPWQLL SEEEYLDAMD EYGDEFEAQM
GAEAIKKMLQ AIDLDAEATR LREEMEATSS ETKQKKISKR LKLIDSFVQS GNKPEWMILD
VLPVLPPELR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLMAPDI IVRNEKRMLQ
ESVDSMLDNG RRGRAVTGTN KRQLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVIVVGPS
LRLHQCGLPK KMALELFKPF IFSKLQKRGL ATTIKAAKKM VEQGLPEVWD VLDEVIREHP
VLLNRAPTLH RLGIQAFEPV LIEGKAINLH PLVCSAFNAD FDGDQMAVHV PLSLEAQLEA
RTLMMSTNNL LSPANGDPII VPSQDVVLGL YYITREKINA KGEGKAFSNW MEVQRALDAK
AVHVHTKIKL KIEETVIDDA GVETVKKGIV DTTVGRALLL RILPKGLGFD LLNLNLTKKN
ISKALNACYR ILGPKETVIF ADQLMYAGFK WSTLAGLSFC SDDMLIPDDK APIIERADEQ
VTEIQRQFAQ GLVTEGERYN KVVDIWSHTN ELVTKSMMEE LQYETVTDAE GNEVKQTSFN
SVYMMADSGA RGSVAQMRQL GGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDVVVT EPDCGTDASI TMAPHVEGGE VVEELKERIL
GRVVAEDVAG LDGEIIVEKG TLLDERLVNL IDESGVDAVK VHSPITCETK FGICQKCYGR
DLARGHMVNL GEAVGVMAAQ SIGEPGTQLT MRTFHIGGTA SASTAQSQVE VKHEGKVKFD
NLKTIKNTEN QVVVTSRSGE ISILDSLGRE KERYKIPYGS MLNVKDGIDV TSGNVLATWD
AHTHPIITEA EGIIQFGNFD GAVEEHVDEL TGLTTHVVKS SKERSSATKE LRPYIQLVDD
KGEVVPFPGT QTPAMYYLPE NSVVVVNQSD KVGAGDILAR IPQESSKTKD ITGGLPRVAD
LFEARVPKEP AIMAEVSGVV GFGKETKGKQ RLVITQDSGE QHETLIPKWR SVDVFEGERV
EKGDVVVDGN PNPHDILRLL GVERLTKYIV DEVQDVYRLQ GVRINDKHIE TVVRQMLRKV
EVRSTGDTSL IKGEQAEFAR VLEMNEKVSD EGSVEASYQR VLLGITKASL ATESFISAAS
FQETTRVLTE AAVSGKEDKL VGLKENVIVG RLIPAGTGFA YHKARKEASE KTQRELAAFM
NTDDESAVQE EVVEETISVT ESVEQTTE
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