| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0152 |
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| Symbol | |
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| ID | 3762444 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 183481 |
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| End bp | 185379 |
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| Gene Length | 1899 bp |
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| Protein Length | 632 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637784857 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_390422 |
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| Protein GI | 78484497 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.407657 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGTTGA ATAACGTGAC TCAATTATTT AAAGCCCCGA CCTTCCCGTG GCCGATTTAC
TTGGGCTATA TGTTCGGGGC TTGGTTGCTG GTTATGGGAT TGGCTAACAT TCAGTTCTTT
CTGATTTACG ATTATTTTTC ACCTAAGTTT TTAATTGTTC CCAGTATTGT GGGGGTGTTG
GTCGGTTTCT TGATTGCGAA ATATCGAATC TTAAGGGATC GCATTGAAGC CAAACAAATG
GAGTTCTCTT CCATTGTTGA TATGGCTGAG GAAGTCTCTT ATTTTCAAAA CATTGACCGA
AGTTATCGTT TTATTTCCCC TTCTGTCTTA AAGCTAACGG GTTATGATGT TTCCACTTTT
TACAGCATGC CAAACCTGTT TTCGGACTTG GTGTATGAGG ATGATTTTCC AAAGTGGCTG
GCGTATGAAC GGAGCATTGC CGAGGGTAAT TCGCCAGAGC CGATTGACGT CCGCTTAACC
ACTAAACATA AGGGGTTGAT TTGGATTCGT CATGTGTCCC GCCCAATTTA TGAAAAAGAT
AAATTGATTG CCGTCAGTTC CACCAATACC GACATTACCG ACCAGGTCAG TCAAACAGAA
GCTATGGAAG AATTGGCGTT AAAAGATGCA TTGACCGGTT TGCCGAACCG ACGAAATTTG
AGCTATGAAG CACAAAGAAT GCTTGATGCG ACGTACCCTT TTGTGTTGAT TATGATGGAT
TTGGATCGTT TTAAAACCAT TAACGAGTCG CTTGGGCATT CGGTAGGCGA TTTGATGTTG
CAGAAAATCA AAGACCGGTT TGAGCTGGTT CTACCGCAAG GCGCGATGCT TTCGAGATTT
GGTGGTGACG AATTTGTGTT TATCATTCCT GGAATCCGTG TGGAACAGGA TGTGGAACAG
ATGATCCGCG ACTTTTTAAA AGTGGTCGAA CGTCCGATGC ATTTGAATGG GTTGAATCTG
CATATCTCAG CCAGCTTTGG CTGGGTTTTC GCGCCTGAAG ATGGTAAAGA TGTTGAAAGT
TTACTGCGAT TTGCGGATGT GGCCATGCAT ATGGCAAAAC AACGGCAAGG GGTTTCTTAT
CTACGTTATT CAGGGCAGGT GGACCACTAT CACCAGCGCT TGCTGGTCAT CGAAAACCGT
ATACGCACGG CGGTTGAAGA GAAGCAAATT GTACCTTTTT ACCAACCGAT GTTTTCAACC
GTGACGGGCG ACTTGGTAGG GGTGGAATGT TTGGCAAGAT GGCATGATGA CGAGTTGGGT
TGGGTTTCTC CAGATGAATT TATTCCCATC GCGGAAGATA TCAACTTAAT TGGAAAGTTG
GGTGAAACCA TCTTAGAACA AGCCATTATC ACCGCTGGAA AACTGGCGAA ATTCTGTCCT
TTAAAGGATG TGTATTTTTC AGTTAACGCG TCTCCTTATC AATTATCCGA AATTGGCTTT
GTCAATAAAG TGAAGTCGTT ATTAGAGCAA TACGATTTAC CGCCTAAGTT ATTAAAGATC
GAGGTAACTG AGTCGTTGTT TATTGGCGGG AATGAATATG CCATTAATGT TCTCGGCGAG
TTACGGGCTT TGGGGGTGAG CATTGCGCTG GATGACTTTG GTACCGGGTA TTCAGCCTTT
GCCGTTTTAC GAGAAGGGTG CATTGACATC TTGAAGGTGG ATAAATCCTT TGTGCAAAAC
ATGGCCGACA ACGATCAAGA AAAAGCGCTG GTTGCAGAGA TTATTCAGAT GGCGCATATT
ATGAATTTAA CCGTGGTTGC CGAAGGGGTG GAAACCAAGG CGCAAAAAGC GTTGCTGGCC
GAAATTGGCT GCGATGTGTT GCAAGGGTAT TTGTTGGCTC GCCCCATGTC GGAAGTGGAG
TTCTGCCCTT ATATGAATTG TACAGGCGCA GCACACTGA
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| Protein sequence | MRLNNVTQLF KAPTFPWPIY LGYMFGAWLL VMGLANIQFF LIYDYFSPKF LIVPSIVGVL
VGFLIAKYRI LRDRIEAKQM EFSSIVDMAE EVSYFQNIDR SYRFISPSVL KLTGYDVSTF
YSMPNLFSDL VYEDDFPKWL AYERSIAEGN SPEPIDVRLT TKHKGLIWIR HVSRPIYEKD
KLIAVSSTNT DITDQVSQTE AMEELALKDA LTGLPNRRNL SYEAQRMLDA TYPFVLIMMD
LDRFKTINES LGHSVGDLML QKIKDRFELV LPQGAMLSRF GGDEFVFIIP GIRVEQDVEQ
MIRDFLKVVE RPMHLNGLNL HISASFGWVF APEDGKDVES LLRFADVAMH MAKQRQGVSY
LRYSGQVDHY HQRLLVIENR IRTAVEEKQI VPFYQPMFST VTGDLVGVEC LARWHDDELG
WVSPDEFIPI AEDINLIGKL GETILEQAII TAGKLAKFCP LKDVYFSVNA SPYQLSEIGF
VNKVKSLLEQ YDLPPKLLKI EVTESLFIGG NEYAINVLGE LRALGVSIAL DDFGTGYSAF
AVLREGCIDI LKVDKSFVQN MADNDQEKAL VAEIIQMAHI MNLTVVAEGV ETKAQKALLA
EIGCDVLQGY LLARPMSEVE FCPYMNCTGA AH
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