Gene Tcr_0109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_0109 
Symbol 
ID3762517 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand
Start bp138775 
End bp140160 
Gene Length1386 bp 
Protein Length461 aa 
Translation table11 
GC content46% 
IMG OID637784814 
Productdiguanylate cyclase 
Protein accessionYP_390379 
Protein GI78484454 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGGTTAC CTCGTTTAAC CCGCAGTATC TTTCTAGATC AATTCATTTT CATGCAGCTG 
GTTGGGGTTC TTATTGGGCT GGCCTTTCCC CATTTTTTAG TTTGGTATGG TTTCCATGCG
GAAGAGGTCA TGACCGTTGA CTTCTATATT GTTTCGCAAA TCGCCGGGCA GATGGTCGGG
CTGATCAGTT TCATCTTAAT CTCTATGGTC ATTCGTCCTC ATTTGAAGCT GCTTTCGCAC
AAAATGCATG AGATTGCCGA AGGGCTTCAG CAAAAAACGT TTCATGAACA AACCAGTCGA
TGTGAAGAAG AGCTTTGCCA AATCGAGGTG GTATCCGATG ATGAGATTGG GGTGAGTGCA
AAAGCTTACA ACAAAATGTT GGAGGCCTTG ATTCAGGCGC ATGAAGTGGA AAGAGTGTTT
AATCGATTTT CAAAGGTCAT GTCCGAAAAC CTGGAGCTCT CGCGCTTGGC CGATGAGACG
TTGGCGTTGC TGATTCAGTC TACCAATATT GAAGCCGGCG CCGTGTTGGT GACTAAAAAT
GGCGTGCTTG AAGTGGGGGC CTCGCGAGGC ATTCTCGATG CTGAGAGTTT GGTGAAACAT
GATGTCATCA ATAAAGCCAT TAAAGATGGT CAGCAAGTGC GAATTGAGCT GCCAAAAAAT
ATTGATTTGG ACGGTGTTCT GGCGCAATTC AAACCGTCAG AAGTGTTTAT CGAACCGTTA
GAGTTTAAAG GCACAAACCT GGGCGTTTTA GTGGCCGCTA CTGGCGCGAT GGTGGCGGAT
GAAAGAACCG ATCAGCTGGT GCAACTGTTC AGTCGCAGCA TTGGTTTGGC TATTAATAAC
GCGATGATCC ATTCAAAATT CCAGAAAATG GCGGCAATTG ACAGTCTAAC CGCGATTTAT
AACCGTCGTT TTGGGATGGA TAGATTACGA GAAGACTTCT CTCGTGCCGT GCGTGAACAA
TCCAGTTTGA GTTTGGCGAT GGTCGATATC GATCACTTTA AGTCCGTTAA CGATACGTAC
GGTCATTTAG TAGGAGACAA AGCCATTAAA CTGATTGCCA CCATTATTAA AAAGACCTTA
CGAGAAGGTG ATATTGTGGT GCGTTATGGC GGTGAGGAGT TCTTGATGAT TTTACATGGC
GCTTCTTCGA CCAATGCGCG TAATGTGTGC GAACGGATTC GTCATCAGGT AAAAGACACT
TTCTTTAAAG AAGGCAATCA GCAAATTCAA TTAACGGTCA GTATCGGGAT CGCTGCTTAC
CCAGAACAAC AGGCCGGTGA TGAGATGGCT TTGATTCATA TGGCCGATCA AGCGTTATAT
TATGCCAAAG AAGGTGGCCG TAACCGAGTG GTTCCTTTCC GGAAAGTGAA TGAAGAAGTC
GCTTAA
 
Protein sequence
MRLPRLTRSI FLDQFIFMQL VGVLIGLAFP HFLVWYGFHA EEVMTVDFYI VSQIAGQMVG 
LISFILISMV IRPHLKLLSH KMHEIAEGLQ QKTFHEQTSR CEEELCQIEV VSDDEIGVSA
KAYNKMLEAL IQAHEVERVF NRFSKVMSEN LELSRLADET LALLIQSTNI EAGAVLVTKN
GVLEVGASRG ILDAESLVKH DVINKAIKDG QQVRIELPKN IDLDGVLAQF KPSEVFIEPL
EFKGTNLGVL VAATGAMVAD ERTDQLVQLF SRSIGLAINN AMIHSKFQKM AAIDSLTAIY
NRRFGMDRLR EDFSRAVREQ SSLSLAMVDI DHFKSVNDTY GHLVGDKAIK LIATIIKKTL
REGDIVVRYG GEEFLMILHG ASSTNARNVC ERIRHQVKDT FFKEGNQQIQ LTVSIGIAAY
PEQQAGDEMA LIHMADQALY YAKEGGRNRV VPFRKVNEEV A