| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0105 |
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| Symbol | |
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| ID | 3762513 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 131416 |
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| End bp | 136209 |
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| Gene Length | 4794 bp |
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| Protein Length | 1597 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637784810 |
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| Product | VCBS |
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| Protein accession | YP_390375 |
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| Protein GI | 78484450 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01965] VCBS repeat
[TIGR03661] type 1 secretion C-terminal target domain (VC_A0849 subclass) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00289742 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGAAC AAAATATTTC AACGAGTGTC GGAAAAGTCA TTCTAATTGA AGGGAACGTC
TATATTAAAG AAGTGACAGG CGAATTGATT CCTTTAATTG AAGGCATGAA TGTCTATGCC
GGTCAGTTGA TTCAAACAGG ACCTCAGAGT TCGATTTTGG TTGAGTTAAG CAATGGAGAG
GTGCTTTCAT TAGGTCGAAA TACATTGGTT CGACTGGATG AAGATTTGAT TGGTTCAACC
GATATAGACG AAAATCAAAC AACCGAAGAA GAGATTCGAA AAGCCATTGA AGCGGTTCAG
GAAGGGAATT TTGATGCGCT AGAAGAAACC GCAGCAGGTC AACAAAATGA TCTTAGTTCA
GCCGCACAAT CAGCCGACTT TATTCCTCCT CCGCGTTCAG AGGGTGAAGT GACCAGTGGA
TATGACACAG GTACTTTCAC CACGTCAAGA CAAACAGATA ATAGAGGGTT TGATACAGTT
CGCTTTGTTG AAGACATTCC ACAAAACGAC ACCCCAGTGG CGGTGAACGA CACAGCGACG
TTAAATGAAG ACGCGAGTGC GATCATCGAC GTGTTGAGCA ATGACAGCGA CCTAGACGGC
GACAGCATCA GTGTGTCCAG TGTGACGCAA CCTGCGAATG GTGCGGTGGT CATCAACACA
GACGGCACCG TGACCTACAC ACCAAATGCG AACTACAACG GCACGGACAG CTTCACCTAC
ACGCTAAGCG ATGGCCAAGG AGGCACGAGC ACAGCGACGG TTAGCCTGAC AGTTGATCCA
CAAAACGACA CCCCAGTGGC GGTGAACGAC ACAGCGACGT TAAATGAAGA CGCGAGTGCG
ATCATCGACG TGTTGAGCAA TGACAGCGAC CTAGACGGCG ACAGCATCAG TGTGTCCAGT
GTGACGCAAC CTGCGAATGG TGCGGTGGTC ATCAACACAG ACGGCACCGT GACCTACACA
CCAAATGCGA ACTACAACGG CACGGACAGC TTCACCTACA CGCTAAGCGA TGGCCAAGGA
GGCACGAGCA CAGCGACGGT TAGCCTGACA GTTGATCCAC AAAACGACAC CCCAGTGGCG
GTGAACGACA CAGCGACGTT AAATGAAGAC GCGAGTGCGA TCATCGACGT GTTGAGCAAT
GACAGCGACC TAGACGGCGA CAGCATCAGT GTGTCCAGTG TGACGCAACC TGCGAATGGT
GCGGTGGTCA TCAACACAGA CGGCACCGTG ACCTACACAC CAAATGCGAA CTACAACGGC
ACGGACAGCT TCACCTACAC GCTAAGCGAT GGCCAAGGAG GCACGAGCAC AGCGACGGTT
AGCCTGACAG TTGATCCACA AAACGACACC CCAGTGGCGG TGAACGACAC AGCGACGTTA
AATGAAGACG CGAGTGCGAT CATCGACGTG TTGAGCAATG ACAGCGACCT AGACGGCGAC
AGCATCAGTG TGTCCAGTGT GACGCAACCT GCGAATGGTG CGGTGGTCAT CAACACAGAC
GGCACCGTGA CCTACACACC AAATGCGAAC TACAACGGCA CGGACAGCTT CACCTACACG
CTAAGCGATG GCCAAGGAGG CACGAGCACA GCGACGGTTA GCCTGACAGT TGATCCACAA
AACGACACCC CAGTGGCGGT GAACGACACA GCGACGTTAA ATGAAGACGC GAGTGCGATC
ATCGACGTGT TGAGCAATGA CAGCGACCTA GACGGCGACA GCATCAGTGT GTCCAGTGTG
ACGCAACCTG CGAATGGTGC GGTGGTCATC AACACAGACG GCACCGTGAC CTACACACCA
AATGCGAACT ACAACGGCAC GGACAGCTTC ACCTACACGC TAAGCGATGG CCAAGGAGGC
ACGAGCACAG CGACGGTTAG CCTGACAGTT GATCCACAAA ACGACACCCC AGTGGCGGTT
GCAGAGATCC GTAACGTATT GGAAGACCAG GTAATTTCCG GTGTAATCAG TGCAAGTGAT
GCTGATTTAC CATCGGGTGA ACATTTAACA TTCTCTACTT CTTCAACAGT AGAAGGTTTG
ACTTTTAATA GTGACGGTTC TTACACCTTT GATGCGTCTG GCTATGATGA TTTGGATCAA
GGTGAGAAAC AAGAAATTAT TGTTCCCGTA ACGGTTACCG ATGAGCAAGG CGCGGCGACC
GAAACTAGTT TGACGATTAA CATTAACGGT CAGAATAATG ATTTGACCTA TGTATCTGAA
TCAGCGTCTT ATCAAAATGT AATTGGTATT TATGAAGTAG GTAATGATGG TAAACCGGTA
AGTGGCAGTA TCGTTTTGAT TAATCAGAAT GGTATGCAGG CGGGAACGCA TCTAGCCGAT
TTGGATCCGG AACAAGATTA TGAGTTTTTT ATCATGTCAA ATGGGGCTGG CAATGTTTCC
GAAACGGATA GCATTACTTT TGATAACAGT GGCGATTTTC CTGTCTTACT GGTAGATGGT
CAACCTTCTG TTGATCCAGT CTATTATACT CAGCCTGAAT TGAATATGGA TGGAAAAGAT
CACTTTAAGT TTACCTTGGA TGGTAACGGT GGCACGGTGA TCAGCATTGA AGATTTACCG
AACCTTGGGG ATGCTGATTT TGGCGATGTG GTGTTGTACA CCAATTTTGA AATGAACAAT
CATATAGTGG TCACTTCGGA TGTGGCTTCA GAGAGCGATT CTGGCATCAG CCATACCGAT
GATATCACTC AAGACAACAC TCCGATTATT CAGGGTAATA CCGAATCGGG TGCAATGGTG
ATTATCAGCG ATGTCAACGG ATTAACGTTA GGCCAAGCCA GAGCGGATGC TTATGGCGAT
TATGCCATCG AAATATCGGC TTTAGCAGAC GGAACGCACG AAATCACTGT GACAGCGATA
GATGGCAATG GGTTATCGGC TAGCACAACG CAGTCGATTA CGATTGACAC ACAAATCGAG
TCTCCTGTGA TCACGAATAT TATCGACCAT AACGGGGACT ATTCAAACGT CACCCTATAT
GGTACGGGAG AACCTGGAAC AACGGTTACA CTCTTTAATA AAGAAGGCTC CACAACAAAT
GGCAATCAAA CCAATTCGAG TGGGTTTGTT CCTGTCGCAA CCGCGCTGCC TGTCATCGTG
GACGAAAATG GGCATTGGAC GGTTGATATT TCGACCCTGA ATAATACGCC AATAAATGAC
AATGAATTCT TTTACGCAAC GCAACAAGAC ATTGCTGGCA ATGTCAGTGC GGCATCGAAT
ACCGTTCACT ATTGGCATGG AACCTGGTCC AATGCAGAGT CTGAAGCCGA AGATGACTTC
ATTATGATGG GATCTGGGCG TGATTCGGCG CAACTGACCT CAAATGATGA TAATGATCAT
GTGGTCATTG ATGGCGGAGA TGGAACGGAT ACAGTGACCT TTAAGGGAGA CTATTCGGAT
TTCACTGTTT CAACTACGGC TGAGGGATAT ACCTTGGTAA CCGAATCCAT TTCTTCTGAT
TCCGATGCAA ACGGTGTCGG AGACGTGAAT GAACTGCGTC ATATTGAATT CATTAAATTC
GATGATGGTA CTTATAGTGT GGCCAATCAA GCATTTATTC CAGTCGATAA TGAAGCTTCC
ATGCCTGAAA TTGAGCTAAA CATTGGTGAG ATGGTCGCCG TGACACAGGA AGGCTACCAG
TATGATGGCG ATGAGGCACG AAATGCGAAC GGACATGGAC ACCATACGTT ATCGTATGAT
TCATATGCCG AAGCGCTTGA TGCACAAAAT GGTGCCAATC ATGATAATGG TAGCTTGGTT
TATAAAAATG TGAATAACGC TGTTTGGAAC TTAAATGATT CAAACGATAA ATTATTTGTC
GTCACTCAGA ATGCAAATGA CGCGGTGATT AATTTAGCGC AAGGCAACAA TACGATTATT
TTTGAAAAAG AACCGGGTAA AAATATTGTC ATCAACGTTG GCACAGGTAA AGATACCTTA
GTCTTGAGCG GTCAGCAAAA CGACTATAAC TTGACGGCAT TGAATGATAA TAATGGCATT
TTGAGTGGTC TTATTACCGG TCCTAATAAC ATGAGTATGA CCATTAATAA CATTGATTGT
ATTGCCTTTA ACGACGGTTC AACGATTGGA GACAGCAGCT TATACCAAGG AGCTGGCAGT
ACAGCCTATT TCTATCCTTT GGAGGTTGAA GCGGAGCTGG AAGATACCGA TGGTTCAGAA
ACCCTGTCCA ATATTCAATT AACCGGCTTG CCCGACGATG GTTCTGTTTC AGTGATGGGA
ACCGGGGTGA CCGCGAATCA AGATGGTAGC TATACGATAG AACTGTTGGA AGATGGTTCC
ATTTCGGAAG ATGTAAAACT GGCCTCTAAC CGAGAACTGG CGGAGGATGA GTTATCGGAT
ATCCATGCTT CTGTAACTGC GATTGAAGCT AATGGCGGTG ACACCGCAAC GGCTGAGGTG
AATGATGCTG GCGATCACTT CTTGTACGGT TTGGATAATG AAGATGATGT GTTTATTATC
GAGAATGAAG ATGATGAACA GGATAGTTAT ATTGAGAACT TTGACATTGA ACACGATGTG
CTCGATATCA GTGATGTCAT TAGTTCTGAA GCGTCAGAAG AGACCTTATC TAATTATTTG
AATCTATCCT TGGTCGATTC CGATGAAGAC GGTCAGGTTG ACGATACGAA AATTTCAATA
GATCGCGATG GTAACGCTGA AACCCAAGAA GATATCAGCA CTATTTATAT TCAGGATAAT
CAGCTTACTG ACAACAATCT GGATGATATG AATATCGACT TTCAAAATGA CTAG
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| Protein sequence | MAEQNISTSV GKVILIEGNV YIKEVTGELI PLIEGMNVYA GQLIQTGPQS SILVELSNGE
VLSLGRNTLV RLDEDLIGST DIDENQTTEE EIRKAIEAVQ EGNFDALEET AAGQQNDLSS
AAQSADFIPP PRSEGEVTSG YDTGTFTTSR QTDNRGFDTV RFVEDIPQND TPVAVNDTAT
LNEDASAIID VLSNDSDLDG DSISVSSVTQ PANGAVVINT DGTVTYTPNA NYNGTDSFTY
TLSDGQGGTS TATVSLTVDP QNDTPVAVND TATLNEDASA IIDVLSNDSD LDGDSISVSS
VTQPANGAVV INTDGTVTYT PNANYNGTDS FTYTLSDGQG GTSTATVSLT VDPQNDTPVA
VNDTATLNED ASAIIDVLSN DSDLDGDSIS VSSVTQPANG AVVINTDGTV TYTPNANYNG
TDSFTYTLSD GQGGTSTATV SLTVDPQNDT PVAVNDTATL NEDASAIIDV LSNDSDLDGD
SISVSSVTQP ANGAVVINTD GTVTYTPNAN YNGTDSFTYT LSDGQGGTST ATVSLTVDPQ
NDTPVAVNDT ATLNEDASAI IDVLSNDSDL DGDSISVSSV TQPANGAVVI NTDGTVTYTP
NANYNGTDSF TYTLSDGQGG TSTATVSLTV DPQNDTPVAV AEIRNVLEDQ VISGVISASD
ADLPSGEHLT FSTSSTVEGL TFNSDGSYTF DASGYDDLDQ GEKQEIIVPV TVTDEQGAAT
ETSLTINING QNNDLTYVSE SASYQNVIGI YEVGNDGKPV SGSIVLINQN GMQAGTHLAD
LDPEQDYEFF IMSNGAGNVS ETDSITFDNS GDFPVLLVDG QPSVDPVYYT QPELNMDGKD
HFKFTLDGNG GTVISIEDLP NLGDADFGDV VLYTNFEMNN HIVVTSDVAS ESDSGISHTD
DITQDNTPII QGNTESGAMV IISDVNGLTL GQARADAYGD YAIEISALAD GTHEITVTAI
DGNGLSASTT QSITIDTQIE SPVITNIIDH NGDYSNVTLY GTGEPGTTVT LFNKEGSTTN
GNQTNSSGFV PVATALPVIV DENGHWTVDI STLNNTPIND NEFFYATQQD IAGNVSAASN
TVHYWHGTWS NAESEAEDDF IMMGSGRDSA QLTSNDDNDH VVIDGGDGTD TVTFKGDYSD
FTVSTTAEGY TLVTESISSD SDANGVGDVN ELRHIEFIKF DDGTYSVANQ AFIPVDNEAS
MPEIELNIGE MVAVTQEGYQ YDGDEARNAN GHGHHTLSYD SYAEALDAQN GANHDNGSLV
YKNVNNAVWN LNDSNDKLFV VTQNANDAVI NLAQGNNTII FEKEPGKNIV INVGTGKDTL
VLSGQQNDYN LTALNDNNGI LSGLITGPNN MSMTINNIDC IAFNDGSTIG DSSLYQGAGS
TAYFYPLEVE AELEDTDGSE TLSNIQLTGL PDDGSVSVMG TGVTANQDGS YTIELLEDGS
ISEDVKLASN RELAEDELSD IHASVTAIEA NGGDTATAEV NDAGDHFLYG LDNEDDVFII
ENEDDEQDSY IENFDIEHDV LDISDVISSE ASEETLSNYL NLSLVDSDED GQVDDTKISI
DRDGNAETQE DISTIYIQDN QLTDNNLDDM NIDFQND
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