| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0061 |
|---|
| Symbol | |
|---|
| ID | 3762215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | - |
|---|
| Start bp | 72315 |
|---|
| End bp | 73841 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637784767 |
|---|
| Product | NADH dehydrogenase (quinone) |
|---|
| Protein accession | YP_390332 |
|---|
| Protein GI | 78484407 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGTCAT ACCCTTTTTT ACCCGTTTTA ATCCCTTTAA TTGGCGGCGT CCTTGTTTTA
TTGGTACGCC AAGCCGGGCT AAATTTGCAA CGTTTGTTAA GTTTTTTATT GGTTCTGGCA
CTGCTTGCTG TCAGCGTGGA ACTCATGTTT GTCGCCAGCC AGGGATCACC TCAAGTGTAT
GCATTAGGTA ACTGGGTGGC GCCATATGGC ATCGTTTTAG TGTTAGACCA ACTGTCCGCT
TTAATGATTT TAATTACAGC CATTTTAGCG GTAGGTGCTT TATGGTATGC CATTTCCACA
AAAATGGATG GACAAGGATC CCATTTCCAT GTGTTATTTC AAATTCAACT GTTTGGCTTA
AACGGCGCCT TTATGACAGG AGATGTCTTT AACCTGTTTG TTTTCTTTGA GGTATTGTTA
CTGGCCTCTT ATGGTTTGAT GCTTCATGGC GGAGGGCGTT TGAGAACCAA AGCGGGCTTA
CAATATGTTG TGATCAATTT GATTGGATCC ACACTTTTCT TATTTGCCGT AGGCGCGCTT
TATGGTGTGT TAGGCACGTT GAACATTGCC GATATGGCCA ATAAAGTGGC TGTCCTTTCA
ACAGAAGATC AAGGTGTCGT TGCAGCGGCC GGTTTATTAT TGTTACTGGT TTTTGGTATT
AAAGCGGCTA TGTTTCCGCT GTATTTATGG CTTCCTCAAG CGTATTCAAA TGCCGCTGCT
CCAGTCGCCG CTTTGTTTGC AATCATGACC AAAGTCGGGT TGTATGCCAT TATTCGTGTC
CACGGCACGG TGTTTGGTGA AAATGCACAA GAATTGGCTT TTTTCTACAC GCCTTGGTTA
CTCGGGCTGG GTCTGATAAC CATCGTTCTA GCGGCATTAG GCGTCATGGC CTCACGAGGT
TTAAGAGAAC AGGTAGCTTA TCTGGTATTG GCCTCCATTG CCACACTCTT GATCGGGATA
GGACTCAATA CGCCGGCCGC TTTATCCGCC AGTTTGTACT ATTTAATCCA TTCCACTCTG
ATTGCAGGTG GTTTCTTCTT ATTAGCCGAT ATCATCGCCC GAGGCAAAGG TTCCTTAGAA
GATCACTTTA AACCCGGCCC GGCCGTACCA CAGGCCATTC TGATCGGCTC GACTTTTATC
TTTGCGGCTA TCGCTATGGT GGGAATGCCG CCTTTATCGG GCTTCTTTGG AAAAGTTCTC
ATTCTTTCAG CCGCTTTGAA CCATGATTAC ATTGGCTGGA TCTTAACCTT AGTCCTTATA
TCGAGCTTAA TAATGATTAT TGCCATGGCT CGTTCCGGTT CCGTTTTGTT TTATCATATT
CAACCCAGTA CGGAGTCAAC AGGAGAACCT CTGAATAAAT TAGCTTATTT AGCCGTCATT
TTATTGTTTT CAACCAGTGT GGTATTAGTG GTATTTGCCC AACCTATTAC CTCAATGACC
GATACCATTG CACAACAATT ATTTGACTCG AATCATTACA TTCATTCGGT TCTTAATACC
CCTGCTGTTG GAGAGGTGTC GCCATGA
|
|---|
| Protein sequence | MMSYPFLPVL IPLIGGVLVL LVRQAGLNLQ RLLSFLLVLA LLAVSVELMF VASQGSPQVY
ALGNWVAPYG IVLVLDQLSA LMILITAILA VGALWYAIST KMDGQGSHFH VLFQIQLFGL
NGAFMTGDVF NLFVFFEVLL LASYGLMLHG GGRLRTKAGL QYVVINLIGS TLFLFAVGAL
YGVLGTLNIA DMANKVAVLS TEDQGVVAAA GLLLLLVFGI KAAMFPLYLW LPQAYSNAAA
PVAALFAIMT KVGLYAIIRV HGTVFGENAQ ELAFFYTPWL LGLGLITIVL AALGVMASRG
LREQVAYLVL ASIATLLIGI GLNTPAALSA SLYYLIHSTL IAGGFFLLAD IIARGKGSLE
DHFKPGPAVP QAILIGSTFI FAAIAMVGMP PLSGFFGKVL ILSAALNHDY IGWILTLVLI
SSLIMIIAMA RSGSVLFYHI QPSTESTGEP LNKLAYLAVI LLFSTSVVLV VFAQPITSMT
DTIAQQLFDS NHYIHSVLNT PAVGEVSP
|
|---|
| |