| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0007 |
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| Symbol | |
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| ID | 3760372 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 7292 |
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| End bp | 8428 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637784713 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_390278 |
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| Protein GI | 78484353 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0298949 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGTTTT TCAACCCACC CGCAACCCCT TTCCTTTACA CCTTGCTATG GGTGACGAGC
TTGATGACGC CTTGGCAAGT CCAGGCGGTT GAAACCTTGA CGCTGGCACC TGAAAAGCAA
GCTTTTTTAG GCATTCAAAC CGCCCCGGTG AAATCGCTTT CTTCTTTTCC TGGTGCACAC
TATTTAGGGG AAGCTATTTT ACCCCCAGAC CAAACGTTTC TGGTGACTTC GCCTTTATCT
GGCATGGTGA CCAGTGTGGT TCATATTCAC GGTCCGATCA AAAAAGATGA CGTGATTGCA
GAGCTACAGA GCCCAGAGCT ACTTAAAGCA CAAAAGAATT TTTTGAACAC CTTATCCGAT
TTAAAAGCCG CGCAGGCTGA TTTGAATCGA GCGAAAAGAT TGTCCCAAAA CGGTGTGGTT
TCGACCAAAA AATACCAGCA ATCAGAGGCC AACTTGAAAA AGATTCAACA AATCAAACTC
CAGCAAAAAC AAGATCTGGC TTTATTGGGC ATGGAAGACA GTGCGATTAG ACAACTGGAG
AAAACGCATC GTCTGCAACC GGCCATCATT CAAATCAAAG CGCCCGTGGA AGGCGAACTT
TATGATTTAA ACATCAGCAG TGGGCAACGT CTGAGCACCA ATCAACCTAT TATTTCGGTG
GCGCAAATCA CCCCCATCGT AGTGGAAGCA AAAATTCCTT TAAAAGAAGC CCAACAGCTA
ATCATGGAGC AAACTGCCCA GCTGGTAGAT TCTGCGGTAA AAGGAAAAAT CGAATATATT
CCGAACTTCA CCGACCCCAT GACTCAGACA GTCAACGTGC ATATTGAATT CGACAACCAA
GACAAGCTCT TGCGCCCTGG ACAAATGGTT CAACTGAACT TTATCTTTGA GCAGCAAGAT
GGCGGTTATC TTTATCAAGT CAATCGCGAC GCGATTAGCC AATACAACAA TCAGGATGTT
ATTTATCTTC AACAGGGCAA CCAGATTCAG GTTGTTCCAA TCGATGTTCT CAATTTTTCC
AAATCACAAA TGTTCTTCAA AACAGCCCAA CCATTGCCAC AAAATGCGCA AGTCATTGTC
AGCAGTACGT CGGCCGTCAA AGGCCTGTTA GACATCTCCA CTGAAGGGGG CGAATAA
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| Protein sequence | MKFFNPPATP FLYTLLWVTS LMTPWQVQAV ETLTLAPEKQ AFLGIQTAPV KSLSSFPGAH
YLGEAILPPD QTFLVTSPLS GMVTSVVHIH GPIKKDDVIA ELQSPELLKA QKNFLNTLSD
LKAAQADLNR AKRLSQNGVV STKKYQQSEA NLKKIQQIKL QQKQDLALLG MEDSAIRQLE
KTHRLQPAII QIKAPVEGEL YDLNISSGQR LSTNQPIISV AQITPIVVEA KIPLKEAQQL
IMEQTAQLVD SAVKGKIEYI PNFTDPMTQT VNVHIEFDNQ DKLLRPGQMV QLNFIFEQQD
GGYLYQVNRD AISQYNNQDV IYLQQGNQIQ VVPIDVLNFS KSQMFFKTAQ PLPQNAQVIV
SSTSAVKGLL DISTEGGE
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