| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_2339 |
|---|
| Symbol | |
|---|
| ID | 3673467 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | + |
|---|
| Start bp | 2414289 |
|---|
| End bp | 2415275 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637711044 |
|---|
| Product | 4-hydroxythreonine-4-phosphate dehydrogenase PdxA |
|---|
| Protein accession | YP_316097 |
|---|
| Protein GI | 74318357 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1995] Pyridoxal phosphate biosynthesis protein |
|---|
| TIGRFAM ID | [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.363936 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACCCGC CCGTTGTCGC GCTGACCGCC GGCGAGCCGG CAGGCGTCGG CCCCGACCTC
TGCATCGCCC TCTCGCAGCG GCCGCTGCCG TGTCGCATGA CCGTCCTCGG CGACGTGCAA
GTGCTCGAGG CGCGCGCCCG CCAGCTCGGC GTCGAGGTCG AATTCCTCGC TGGGGAGTCC
GTCCCCGAAC ATCGGCCGGG GGCGCTCCAC GTCCGTCATA TCCCGGCCGC GGCAGCCGTG
AATGCAGGCC AGCTCGACCG CCGCAACAGC GCGCACGTGC TGGCGCTGCT CGACGCCGCG
CTCGCCGGCT GCATGGGCGG CGCCTACCAG GCACTGGTGA CCGCCCCGGT GCACAAGGGC
GTGATCAACG ATGCGGGCTT TCCCTTCACC GGCCACACCG AATATCTCGC CGATCACAGC
GGGACGCCGC GGGTCGTCAT GATGCTGGCC GGCGGCGGGC TGCGCGTCGC GCTCGCGACG
ACGCACCTGC CACTGCGCGC GGTCGCCGAC GCGATCACGC CGGCACTTCT CGACCAAGTC
GTTCGCATCC TGGCTGCCGA GCTGGCGCGC AGATTCGGCC TTGCGCGCCC CCGCATCGCC
GTCGCCGGCC TCAACCCGCA CGCCGGTGAA TCGGGCCATC TCGGGCGCGA GGAGATCGAG
ATCATCGAAC CCGCGCTCGC GCGCCTGCGC GCCGAAGGTT TCGACCTCGT CGGCCCGCTG
CCCGCCGACA CGCTGTTCTC GCGGATACGC CTCGACCCCT GCGACGCGGT GCTGGCGATG
TACCACGATC AGGGGCTGCC CGTGCTGAAA TACGCGAGCT TCGGCAGCGC GGTCAACATC
ACGCTCGGCC TGCCCTTCAT CCGCACCTCG GTCGACCACG GCACGGCGCT CGACCTCGCC
GGCAGCGGCC GCGCCGAAGT CGGCAGCCTC GTCGCCGCGA TCGCAATGGC GACCGAGATG
GCCACCCGGG ACGCGGTGGC TCCCTGA
|
|---|
| Protein sequence | MNPPVVALTA GEPAGVGPDL CIALSQRPLP CRMTVLGDVQ VLEARARQLG VEVEFLAGES
VPEHRPGALH VRHIPAAAAV NAGQLDRRNS AHVLALLDAA LAGCMGGAYQ ALVTAPVHKG
VINDAGFPFT GHTEYLADHS GTPRVVMMLA GGGLRVALAT THLPLRAVAD AITPALLDQV
VRILAAELAR RFGLARPRIA VAGLNPHAGE SGHLGREEIE IIEPALARLR AEGFDLVGPL
PADTLFSRIR LDPCDAVLAM YHDQGLPVLK YASFGSAVNI TLGLPFIRTS VDHGTALDLA
GSGRAEVGSL VAAIAMATEM ATRDAVAP
|
|---|
| |