Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_2079 |
Symbol | |
ID | 3672251 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | + |
Start bp | 2171886 |
End bp | 2173700 |
Gene Length | 1815 bp |
Protein Length | 604 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637710782 |
Product | preprotein translocase protein SecD |
Protein accession | YP_315837 |
Protein GI | 74318097 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCGCT ACCCGCTCTG GAAATACCTG CTCATCGGCG TCACGCTGGT GGTCGCATTC CTCTATACGC TGCCGAATTT CTTCGGTGAG GTGCCCGCGG TCCAGGTTTC GCCCGTGCGC ACGAGCGAAA CGGTCGACAC AGCCCTGCTC GGCCGCGTCG AGGCGCTCCT GAAGACGGCG TCGCTGCCGA CGAGCGGCGT GGAACTCGCG GGCAACAGCA TCAAGGCGCG CTTCGCCAGC ACCGACGTCC AGATCAAGGC CAAGGACGTG CTGCAGAACG GGCTCGGCGA GCGCTACACG GTCGCGCTGA ATCTCGTCTC GGCCTCCCCC GCGTGGCTCT CGACGCTCAA CGCGCTGCCG ATGTATCTGG GCCTCGACCT GCGCGGCGGC GTGCACTTCC TGCTCGAAGT CGACATGAAG GCGGCACTCG AAAAAGCCGC TGTCCGCTAC CAGAACGACT TCCGCACCGA GTTGCGGGGG GACAAGATCC GCTACAGCCG GATCAGCCGC GAGGGCAACG CGGTCGTCGT CCGTTTCGCG ACGCGTGACC AGCGTGACGC GGCGGCGGAC AAGCTCGCTG CGGTCTTCAC CGACCTCGGC TTCGCGGCCG AAGACCTCGA CGACGGCTTC CTGCTGACCG CGCGCCTCAA GCCCGAAGCC GAGAAGCAGG TGCAGGAATT CGCGCTGCAG CAGAACATCA CCACGCTGAG AAACCGCGTC AACGAGCTCG GGGTCGCCGA ACCCGTGATC CAGCAGCAGG GCGCCAATCG CGTCGTCGTG CAGCTGCCGG GCGTACAGGA CACGGCCAAG GCCAAGGACA TCCTCGGCCG CACGGCGACG CTCGAGGTGC GCATGGTCGA CGAACAGGCC GATCCGCTGC TCGTCGAACA GGGCCAGGCG CCATTCGGCG CCGAGATCGT CGCCAGCCGC GAAGGCGGCA AGATCGCGGT CAAGAAGGAC GTCGTGCTGA CCGGCGACTC GATCACGGAC GCCGCCCCCG GTTTCGACAG CACGAGCGCG CAGGCGGCGG TGCACATCAA CCTCGACGGC AAGGGCGCGC GCATCTTCAA GGACGTGACG CGTGAGAACG TCGGCAAGCG CATGGCGATC CTGCTGATCG AAAAAGGTAT CGCCGAGGCG ATCACCGCGC CGGTCATCCG CGAGGAAATC GGCGGCGGCC GGGTCCAGAT CACGGGCATG GAGACGGCCC AGGAAGCTTC CGACGTCGCG CTGCTGCTGC GTGCCGGCGC GCTCGCCGCG CCGATGCAGA TCGTCGAGGA GCGCACGGTC GGACCGAGCA TGGGCGCCGA AAACATCGAA AAAGGCTTCC ATTCCAACAT CTGGGGCTTC CTCGCTGTCG TCGCGTTCAT GACGATCTAT TACCGCGTGT TCGGCCTCTT CTCGTCGGTC GCCCTGGCGA TCAACGGCTT CTTCCTGATC GCGCTGCTGT CGATGCTGCA GGCGACGCTG ACGCTGCCCG GCATGGCCGC GATCGCGCTG ACGCTCGGCA TGGCGATCGA CGCCAACGTG CTGATCAACG AGCGCATCCG CGAAGAGCTG CGCAACGGCG CGACGCCGCA GGCCGCGATC CACGCCGGCT ACGACCGCGC CTGGGGCACG ATTCTCGACT CCAACCTGAC GACACTGATC GCGGGCATCG CGCTCTTCTG GCTCGGCTCG GGCCCGGTGC GCGGCTTCGC CGTCGTGCTG TGCCTCGGCA TCCTGACCTC GATGTTCAGC GCGGTGACGG TGTCGCGGGC GATGGTCAAC CTCACCTACG GCCGCCAGCC CCGTCTGGCC AAAGTTTCGA TCTAA
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Protein sequence | MNRYPLWKYL LIGVTLVVAF LYTLPNFFGE VPAVQVSPVR TSETVDTALL GRVEALLKTA SLPTSGVELA GNSIKARFAS TDVQIKAKDV LQNGLGERYT VALNLVSASP AWLSTLNALP MYLGLDLRGG VHFLLEVDMK AALEKAAVRY QNDFRTELRG DKIRYSRISR EGNAVVVRFA TRDQRDAAAD KLAAVFTDLG FAAEDLDDGF LLTARLKPEA EKQVQEFALQ QNITTLRNRV NELGVAEPVI QQQGANRVVV QLPGVQDTAK AKDILGRTAT LEVRMVDEQA DPLLVEQGQA PFGAEIVASR EGGKIAVKKD VVLTGDSITD AAPGFDSTSA QAAVHINLDG KGARIFKDVT RENVGKRMAI LLIEKGIAEA ITAPVIREEI GGGRVQITGM ETAQEASDVA LLLRAGALAA PMQIVEERTV GPSMGAENIE KGFHSNIWGF LAVVAFMTIY YRVFGLFSSV ALAINGFFLI ALLSMLQATL TLPGMAAIAL TLGMAIDANV LINERIREEL RNGATPQAAI HAGYDRAWGT ILDSNLTTLI AGIALFWLGS GPVRGFAVVL CLGILTSMFS AVTVSRAMVN LTYGRQPRLA KVSI
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