Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_1871 |
Symbol | |
ID | 3673981 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | - |
Start bp | 1967090 |
End bp | 1968934 |
Gene Length | 1845 bp |
Protein Length | 614 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637710570 |
Product | putative epimerase/dehydratase polysaccharide-related biosynthesis protein |
Protein accession | YP_315629 |
Protein GI | 74317889 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTTTA ATTCGCGCAC CCTCGTCATC ATCGTCTACG ACATCCTGGT GGCGGCGTTC GCCTGGCTTG GCGCCTACTG GCTGCGCTTC AATCTCGACG TGCCGCCGGA GTTCGAGACC GCCGCGCTCG CGACGCTGAT CTGGGTTGTG CCGCTGCAAG CCGTCGTATT CTGGCGCTTC GGCCTGTATC GCGGTATCTG GCGCTTCGCG AGCTTGCCCG ACCTCAAGCG TATCGTGCTC GCTGCGGGCC TAGCGGCGCT GCTGATCCCT GTTGCGTTGG TGCTCTTTCG CGTCCACGCC ATCGTTCCGC GTTCGGTGCT GATTCTCGAC CCGCTGCTGC TGGTCATGGT GATGGGCGGC AGCCGGCTCG CCTACCGCGC GTGGAAGGAG CACCGGCTCG CGAGCGTGCT GCGCCCCGAC AGCAAACCTG TGCTGGTGGC GGGTGCGGGC TCGGCGGCCG ACTTCCTGCT CCGCGAACTC GCGCGCAACC CGGCGGGCTT CCATGTCGTT GGCCTGCTCG ACGACAGCCG CGAGAAGCAG GGGCGGCTCG TTCAGGGGGT GCCGGTTCTC GGCGTGCTCG ACGATGCCGC GGTGGTCGCG AAGCGCTTGG GCGTCGACGA CGTCGTCCTT GCGCTGCCTT CAGCCGCGCA CGAGATCCGC AAGCGCATCA CCGAGGCGTG CACCGGCGCA GGTCTCAACG TGATGACCGT TCCTTCGCTC GAAGATCTGG TGGGCGGCCG CGTTTCGGTG TCGAGCCTGC GGCGCATCGA GCTCGACGAC CTCCTCGGAC GCGATCCCGT GCAGCTCGAC GACAGCGGCC TGCATGGCTT GCTGACGGGG CAGGTGGTCA TGGTGACCGG CGCGGGTGGC TCGATCGGCG CCGAGCTCTG CCGGCAGATC GCGCGCTTCG CACCGGCCAA GCTCGTGCTG TTCGAGCAGT CCGAGCTCGC GCTGTACGCG ATGGAGCAGG AGCTGCCGCG CCGCCATCCG GAACTGGCAG TCGTGCCGGT GATCGGCGAC GCCAAGAACG CTGCGTGGGT CAATCGCGTC ATGGAGATGC ATCGGCCGGC GATCGTCTTC CACGCCGCGG CGTATAAGCA CGTTCCGCTG ATGGAGAACG GCAACGCCTG GGAAGCGGTG AAGAACAACG TGCTCGGCAC GCAGGTCGTC GCCGCGGCGG CGCAGGTGCA TGGCGTCGGA AAGTTCGTGT TGATTTCGAC CGACAAGGCC GTCAATCCGA CCAACGTGAT GGGTGCGAGC AAGCGCCTTG CCGAGATGGC GTGTCAGGCG ATGCAACAGC GCGCCGGCGA TGCCCCGACC GGTACGCGTT TCGTATCGGT GCGGTTCGGC AACGTGCTCG GATCGTCGGG CAGCGTCATC CCAAAGTTTC AGAAGCAGAT CGAAGCGGGC GGACCGGTGA CGGTCACGCA TCCCGAAATC ACCCGCTACT TCATGTCGAT TCCGGAAGCC GCGCAGCTCG TCCTGCAGGC AGGCCTGATG GGTAAAGGCG GCGAAATCTT CGTGCTCGAC ATGGGCGAGC CCGTGAAGAT CGCCGAGCTT GCGAAGCTCA TGATCCGGCT GTCGGGCGCG GACGAAGCGC GCATACGCAT CGAGTACACC GGCCTGCGCC CGGGCGAGAA GCTCTACGAG GAGCTGCTCG CGGACGACGA ATCGACGCTT CCGACCCCGC ATCCGAAGCT GCGCGTCGCC AAGGCGCGGC CCGCAGACCC GGGCTGGCAT GCCGAATGCC TCGACTGGCT CGCGTATCCG GATAGCTACG ACGAGGCCAC GGTCAAGCGC CAGCTCAAGA CCTGGGTGCC GGAATACCAG CCGGAATCCG CGTGA
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Protein sequence | MKFNSRTLVI IVYDILVAAF AWLGAYWLRF NLDVPPEFET AALATLIWVV PLQAVVFWRF GLYRGIWRFA SLPDLKRIVL AAGLAALLIP VALVLFRVHA IVPRSVLILD PLLLVMVMGG SRLAYRAWKE HRLASVLRPD SKPVLVAGAG SAADFLLREL ARNPAGFHVV GLLDDSREKQ GRLVQGVPVL GVLDDAAVVA KRLGVDDVVL ALPSAAHEIR KRITEACTGA GLNVMTVPSL EDLVGGRVSV SSLRRIELDD LLGRDPVQLD DSGLHGLLTG QVVMVTGAGG SIGAELCRQI ARFAPAKLVL FEQSELALYA MEQELPRRHP ELAVVPVIGD AKNAAWVNRV MEMHRPAIVF HAAAYKHVPL MENGNAWEAV KNNVLGTQVV AAAAQVHGVG KFVLISTDKA VNPTNVMGAS KRLAEMACQA MQQRAGDAPT GTRFVSVRFG NVLGSSGSVI PKFQKQIEAG GPVTVTHPEI TRYFMSIPEA AQLVLQAGLM GKGGEIFVLD MGEPVKIAEL AKLMIRLSGA DEARIRIEYT GLRPGEKLYE ELLADDESTL PTPHPKLRVA KARPADPGWH AECLDWLAYP DSYDEATVKR QLKTWVPEYQ PESA
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