| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1748 |
|---|
| Symbol | |
|---|
| ID | 3671333 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | - |
|---|
| Start bp | 1838779 |
|---|
| End bp | 1839966 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637710440 |
|---|
| Product | putative outer membrane protein |
|---|
| Protein accession | YP_315506 |
|---|
| Protein GI | 74317766 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.617475 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACACA CGGTGTTGAT TTTCGTCGGC TTGCTCCTCG CCCAGCCGGC CTGCGCGGGG
AACCTGCGCA CGGCCCTCGA TCAGGCCTGG GATCGGAATC CCGACGCCCG AGTACTCGAA
GCGAGGCGCG CCGAGAGCGA TGCCCAGGCG GTCGCGGCAA ACAGCCTGCT GCCGGGCGCG
CCCGCGCTCG TCGTCGGCCA TCGCAGCGAC CAATTGAACG ACGACGCCGG GGCCCGCGAG
TGGGAAGCCG GGGTCGAGAT GCCGATGTGG CTGCCAGGCC AACGCGGGGC GCGCCAACGC
GAGGCCCACG CCGGCCGCTC CGGGCTCGAG GCCAGCATCC GCGCGCTGCG TTTGAAGCTC
GCCGGAGAGT TGCGCGAAAC GATCTGGCAA CTGCGTGCGA CGCAGGCGCA AATCCAGCTT
GACGAAGCGC GCGTGCAGAC CGCCGAAAAG CTTGCGCAAG ACGTCGCCAA GCGCGTGCGC
GCCGGAGAAC TCGCGAGGAC CGACCTGAAT CTGGCGCAGA ACGAGTGGCG CAGCGCGCAG
GCCATCTTGC TGCAAAGCCG CAGCGAGCTG CTGCAGGCCG AGCAGGCCTA CGCCGCGCTG
ACGGGCGACA CCACGCCGCC TGAGGACAGT GCCGAGGACG CGCGGGCTCA AGCCTTGTCC
GACGACCATC CGCTGCTCGA AGAAGCGCGT CTGGCGATCG ACGTCGCGCA GGCGCAGGTC
GAGGTGGCGC GGCAATCGCG TCGCGACAAT CCCGAAGTCG CCCTCAGCAC GCGCCGCGAG
CGCAACGCGC GCGAACCCTA CGCGAACACC GTCGCGCTCG AACTGCGCCT GCCTCTGGCC
ACCGCTGCAC GCAATCTGCC GCTTACGAGC GCCGCGCAGA CTGCGCTGAC GGGCGCGCGG
AGCGAATACC GCCGCCTCGG CGTCGCGCTC GAGCACCGCA GACAGCAGGC CGAGCAGGCA
CTCGCGGCCG CCGACCAGTT GCTTGCGCTC GCGCAGCAGC AGCGCGACGC GGCGCGCGAA
AACCTCGGCC TGATCCAGAA AGCCTTCGAT CTCGGCGAAA CCGACCTGTT CACGCTAATG
CGCGTTCGCA CGGCGGCCTT CGAGGCGGAA CAGGCCTACA GCCAACAGCA GATCGCCCAG
GCGCTGGCCC GCGCCCGCCT CAATCAAGCT CAAGGAGTTT TGCCGTGA
|
|---|
| Protein sequence | MRHTVLIFVG LLLAQPACAG NLRTALDQAW DRNPDARVLE ARRAESDAQA VAANSLLPGA
PALVVGHRSD QLNDDAGARE WEAGVEMPMW LPGQRGARQR EAHAGRSGLE ASIRALRLKL
AGELRETIWQ LRATQAQIQL DEARVQTAEK LAQDVAKRVR AGELARTDLN LAQNEWRSAQ
AILLQSRSEL LQAEQAYAAL TGDTTPPEDS AEDARAQALS DDHPLLEEAR LAIDVAQAQV
EVARQSRRDN PEVALSTRRE RNAREPYANT VALELRLPLA TAARNLPLTS AAQTALTGAR
SEYRRLGVAL EHRRQQAEQA LAAADQLLAL AQQQRDAARE NLGLIQKAFD LGETDLFTLM
RVRTAAFEAE QAYSQQQIAQ ALARARLNQA QGVLP
|
|---|
| |