Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_1687 |
Symbol | |
ID | 3671269 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | - |
Start bp | 1776147 |
End bp | 1778501 |
Gene Length | 2355 bp |
Protein Length | 784 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637710376 |
Product | putative type IV secretory pathway VirD4 components |
Protein accession | YP_315445 |
Protein GI | 74317705 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00283538 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.176159 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCGGCC AGGCGACCCG CAAAAGCAAT CAGCCCACCG GCGCCGATCG CTGGGGCGCG CCGCTCTTTC TGGGCGGCCT GGCTGGTGCG CTGGCCGCTG CCGGCCTTTA CCTGGGCGGC TGGGGGTGGG TATTACAGTC TCAGGGCTTG GGCTTCCACG TCGAACCCGC GCTGCATCAT CTTCTTCCCG GTCGGCAGCT GGGAGATCGC CTGCACGACA AGACCGTGGC CTTCATGCAG GCCGAGCACC CCGCTGCCCT GAAAGCCCTT GAAGTCGGGC CGCAGATCGC CGGCCTGCTG GCGGGTGGGC TTGTGTTTTG GATGGTGTAC GGCGATGTCG TCATTGCGAC CCAGGACCGC CATATCCGAG GCCGGCGGCG CCTTAAAGGA GCGGCGGCAC TTGCAGCGTG GGTGAAGGAC GAAGGGGAGG CGGCGGACGG ATTGCGTATC CATCCCAAGC TGCCCCCCAT CTCGAAATCC CGCGAGACCC GCCACATCCT GATCGTCGGC GGCGTCGGCA GCGGCAAAAC ACAGACGCTG CTTCCTTTGA TGCGCGCCGC GCGCGAGCGG GGCGACAGGG CGATTATTTT TGACTTCAAG GGTGACTTCA CCCCCGATTT TCCGTCATGC ACCGCGCGGC ACAAGGGACG TGCGATCGAG GTTGAGGACG TGATTTTCGC ACCATGGGAT AGCCGATCCA CGCTTTGGGC TGTTGCGCGT GATGTGGACA CCTTGTCTGC CGCGCGCGAG TTCGCCGCGC GCATGATCGT CGAGCCCGGC GGGGGTAGCG GCTCGCCCAT GTGGGCAAAC GCCGCGCGGC AGGTGCTGGT CGCTTGCCTC GTCGAGTTGC AATCAACCAA GCCAGGCGAC TGGGGTTTTG CCGACCTGGT TGCGGGACTC ACTCGCCCGG TTGACCAGTT GACCGAAGCG GCCAGACGCT ACTTCCCCGA GGCAGTGAAA GCGCTCGGCG ACGGCCAGCA GAACGTCACG ACAGCCGGCA TTCAGATCAA TCTGATGTCT TACCTCGCGG TCATCTTTGA CTTGGCGCGA GCTTGGCCTG GGCCTGGGAT TTTTAGCATT CGTGAATGGC TCACCGAGGT TGGGGCGCGG CGCGTAAAAA CCGTGATCCT CCAGCACGAC GGGCGCTTCG AGACCCTTGC CCGCGCTTTC AACAGTGCCG TACTTGGGCT CGCCGGCCAG TTGATCAAGT CCAACTTGGT TCGTGATTCG AAGGAAAGAA AACTTTGGTT ATTCCTGGAT GAGTTCCCTG AGTTGGGGAA GGTGGAAACG GTCCTCTCGC TTGCCGCGGT CGGACGTAGC AAGGGAATAC GAGTGGTACT CGGTTTACAG GACATCAGCC AGGTTAAAAA GATCTATTCC GAGCACGATA CAAACTCAAT TGTCTCGATG GTTGGCACCC AGGTTATCGC TCAAGTCTCC CCGGGGGAGA CGGCCAAGTA CATCGCGGAA AATCTGATCG GCGATCGCGA CCTAGAGCGG CTTGGCGTGT CTATAACCAG CGGTGCAGGA CGCGCTCCCG GAATTTTCAC GTCTGGTGGC AATCGCACAT CGAAATGGGA GGATAAGCGC GAGCTGGTGG TGTTGCCCAG CGAACTCTTG CAGCTTGGCC CTGATCTTGA TTTGGGCGGC GTCAAAGTGT GGATGTCGGG GATTGGCGAG GACGTGCTTG AAGTCCTGAT TCCGTTTTCC GATCCCAACC ATTTTCGTCC GTCCAGCGTG ATCGCTGACT GGACGCGCTA CCCGAATCAG CCGATTGCGC CTGCTGTTGC CACCCCTGCG CAGGAACCAT CTCAGCCCGT GCCCTCATGG GCTGAAGAAG CAGCAGAGGC AGACGTCGCG CCGTTACTAG TAACGCCAAC TTCACCAGCA GTAACGCCAG TCGCGAATCC CTGGGCGGAC GACATCGACG GCGACGAAGC CGGCGAAGGC GAAGAGTCTG CGCCTGCTCC CGAGACCACG ACCGCCACCG ATCCGCTGGC CTTCCTTGAC GACGGCGAGT CCACAGAAAA AACGGCAGCC GCTGAGTTCG AAACCCGCAT GCTGCCCATT GCCACCCCAC TGTCCAGCCA ACTGGCCGAC CAGGCCAAGG AAGAAGCGAC GGAAAGCATT GCGGGCGAGC TCGCTCAACA AGTCGGCATC GCAGCGCTGC CATCAGGCAT CGCCGAAATC GCCCACGCCG TGGAAATCGC GGACACGCTC CTCGACCTTG GCGCCAGCGC CGCCATGCCG CCGACCGAGG TATTACCAGT AACGGAGGCC GGGGTTCAGC CTCCACGAAA GAAAAAAATC CGCCTAAAGA AATCCGCCAC AGCCCAGCTT GAGGAGAGTA TCTGA
|
Protein sequence | MTGQATRKSN QPTGADRWGA PLFLGGLAGA LAAAGLYLGG WGWVLQSQGL GFHVEPALHH LLPGRQLGDR LHDKTVAFMQ AEHPAALKAL EVGPQIAGLL AGGLVFWMVY GDVVIATQDR HIRGRRRLKG AAALAAWVKD EGEAADGLRI HPKLPPISKS RETRHILIVG GVGSGKTQTL LPLMRAARER GDRAIIFDFK GDFTPDFPSC TARHKGRAIE VEDVIFAPWD SRSTLWAVAR DVDTLSAARE FAARMIVEPG GGSGSPMWAN AARQVLVACL VELQSTKPGD WGFADLVAGL TRPVDQLTEA ARRYFPEAVK ALGDGQQNVT TAGIQINLMS YLAVIFDLAR AWPGPGIFSI REWLTEVGAR RVKTVILQHD GRFETLARAF NSAVLGLAGQ LIKSNLVRDS KERKLWLFLD EFPELGKVET VLSLAAVGRS KGIRVVLGLQ DISQVKKIYS EHDTNSIVSM VGTQVIAQVS PGETAKYIAE NLIGDRDLER LGVSITSGAG RAPGIFTSGG NRTSKWEDKR ELVVLPSELL QLGPDLDLGG VKVWMSGIGE DVLEVLIPFS DPNHFRPSSV IADWTRYPNQ PIAPAVATPA QEPSQPVPSW AEEAAEADVA PLLVTPTSPA VTPVANPWAD DIDGDEAGEG EESAPAPETT TATDPLAFLD DGESTEKTAA AEFETRMLPI ATPLSSQLAD QAKEEATESI AGELAQQVGI AALPSGIAEI AHAVEIADTL LDLGASAAMP PTEVLPVTEA GVQPPRKKKI RLKKSATAQL EESI
|
| |