Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_1641 |
Symbol | mnmC |
ID | 3673026 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | - |
Start bp | 1724603 |
End bp | 1726453 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637710328 |
Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
Protein accession | YP_315399 |
Protein GI | 161899033 |
COG category | [E] Amino acid transport and metabolism [S] Function unknown |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) [COG4121] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.168869 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCAGAA CCATCGTCCC CGCCCGACTC GAATTCCGCG ACGGCGTCCC GTATTCCGCG GCCTACGGCG ACGTTTACCA TTCTGCCGAC GGCGGCCCCG GCCAGGCCCG CCATGTCTTT CTTGCCGGCT GCGGCCTGCC CGCCGCCTGG GCCGGCCGCG ACAGCTTCGT CGTGCTCGAG ACCGGTTTCG GCACCGGGCT GAATTTTCTC GCGACCTGGG CGGCGTGGCG TGACGACCCC GCCCGGCCGT CGCGGCTGCA TTTCCTGTCG GTCGAAAAAC ACCCGTTCCA GGCGGCCGAC CTCGCCCGCA TTCACGCGCA ATGGCCCGAA TTCGCTGAGC TGTCCGAGGT GCTGCGCGGC AATTGGCCCA TGCTTCTGCC GGGATTCCAC CGCGTCGCGC TCGACGGCGG CCGCGTGCAG CTCACGCTGA TGCTCGGCGA GGCGGCGGAA TGCCTGCACG AGGTCGAGGC GCGCGTGGAC GCGTTCTATC TCGACGGCTT CGCCCCCGAC CGCAACACGG ATCTGTGGCA ACCCCAATTA TTTGAAACCC TGGCGTGGCT CGCGAACCCG GGGGCAACGG CCGCGACCTA CACCGTCGCG GCGCCGGTGT TACAGGGGCT GACCCAAGCC GGCTTCGCCT GCGAAAAACG TCGCGGCTAC GGCCGCAAGC GTCATTGCAT GAGCGCGCGT TTCGCAGGCC GATCACGCGC GGAGGTGTCC GCTGCCCCCC GGCATGTCGC GGTCATCGGC GGCGGCGTCG CGGGCGCGGC GGCAGCGCGC GCGCTGGTCG ACCGCGGCGT GTCGGTAACG CTGCTCGAGC GCGCAACCGC GCCGGCCGAG GGGGCTTCGG GCAATCCGGT CGCAGTGTTC CGGCCGCTGA TTTCGCGCGA CGACAACCGC GCGACGCGCC TCACACGGGC GGCTTTCCTT CACGATCTGC GCGCGTGGGC CGCGCTCGGC GAGTGCGTGC AATGGGCGCG TTGCGGCGTC CTGCACCTCG CGCGCGACGC GGCGACCGCC GCGAAGCAGC AGCAGGCCTT GGCCGAGATT GCCCTCCCGG CCGATTACGC GCGCTGGGTG GACTTGGGCG AGGCGCGCGA ACTCGCGCAC TGGTCCGTCG CCGCGCCCGG CACGTTCTAC TCGGCGGCGG GCTGGGTCGT GCCCGGAAGC CTGTGCCGCG CCTGGCTCGA CCACCCCGGC ATCGGCTTGC AGACCAATCG GGCGGTCGGG CGTCTCCAAG CGGTCTCGAA CGGCTGGCAG ATCCTGGATC GCGAAGGCCA CGCGCTAGCC GAAGCCGACG CGGTCGTGCT CGCCAACGCA CGCGACGCGT CGCGTCTCGC CCTCGGTCAA GCCTGGCCGC TCCACACTGT GCGCGGGCAG GTCACGCAAC TGCCGGCGGG CAGCCTGCCG GAAATCGCCC GTGTGATCGC GCGCGAAGGC TACGTCGCGC CGGGGGCCGC CGGGCCGCTG GTCGGCGCGA CTTACGAACA TCCTGAAGGG TACAAGGAGA ACGACGACGA CACCGCGCCG CGCGCGGCGA GCGACGTCGC CAATCTCGCG CGCCTCGAGG CCATTCTGCC CGGCGCTACT CAGCGATTCG TGTCGAATGA GGTGAGCGGC CGCGCCTCGC TGCGCGCGAC CCTGCCGGAT CGCCTGCCGC TCGTCGGGGC AGTCGATGGA CAACCGGGGT TGTATGTGGC GGCGGGTTAC GCCTCGCGCG GCGTCGTCTG GGCGGGGCTG CTCGGGGAGG CGCTTGCCGA CCTGATCACC GGCCAGCCGC TGCCTTTGGA AGCCGAGTTG ATGCGAGGAA TCGCGCCGGC GCGGTTTGCC GGCAACAGAA AGACGGCCTG A
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Protein sequence | MLRTIVPARL EFRDGVPYSA AYGDVYHSAD GGPGQARHVF LAGCGLPAAW AGRDSFVVLE TGFGTGLNFL ATWAAWRDDP ARPSRLHFLS VEKHPFQAAD LARIHAQWPE FAELSEVLRG NWPMLLPGFH RVALDGGRVQ LTLMLGEAAE CLHEVEARVD AFYLDGFAPD RNTDLWQPQL FETLAWLANP GATAATYTVA APVLQGLTQA GFACEKRRGY GRKRHCMSAR FAGRSRAEVS AAPRHVAVIG GGVAGAAAAR ALVDRGVSVT LLERATAPAE GASGNPVAVF RPLISRDDNR ATRLTRAAFL HDLRAWAALG ECVQWARCGV LHLARDAATA AKQQQALAEI ALPADYARWV DLGEARELAH WSVAAPGTFY SAAGWVVPGS LCRAWLDHPG IGLQTNRAVG RLQAVSNGWQ ILDREGHALA EADAVVLANA RDASRLALGQ AWPLHTVRGQ VTQLPAGSLP EIARVIAREG YVAPGAAGPL VGATYEHPEG YKENDDDTAP RAASDVANLA RLEAILPGAT QRFVSNEVSG RASLRATLPD RLPLVGAVDG QPGLYVAAGY ASRGVVWAGL LGEALADLIT GQPLPLEAEL MRGIAPARFA GNRKTA
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