Gene Tbd_1580 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_1580 
Symbol 
ID3672061 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand+ 
Start bp1663770 
End bp1664414 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content67% 
IMG OID637710267 
Producthypothetical protein 
Protein accessionYP_315338 
Protein GI74317598 
COG category[R] General function prediction only 
COG ID[COG1926] Predicted phosphoribosyltransferases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.00205223 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGTTCG CCAATCGCCA CCAAGCCGCC GAGCGTCTTG CCCACGCGCT CGCCGCCTAC 
AAGGGCAAGA ATCCGCTAAT CCTCGCGATT CCGCGCGGCG CGGTGCCGAT GGGGCAAACA 
CTTGCTCAGG AATTGCGCGG CGAACTCGAC GTCGTGCTCG TGCGCAAGCT GCGCGCGCCG 
TTCAATCCGG AATTCGCACT CGGCTCGATC GACGAGTCGG GCTGGGCATA TGTCGCCGAC 
CATGCGGAAT CCGCAGGCGG CACGGCCGCG TATCTCGAAC AGGAAAAGCA GGCGCAGCTC 
GCGACGATCC GCGCGCGGCG CGCGCAATAC ACCCCGCTTC GCGCACCGAT CGACCCGGCC 
GGGCGCATCG TGATCGTCGT CGACGACGGG CTGGCGACCG GCGCGACGAT GATTTCCGCA 
CTGCACGCAC TACGCGCGAG AAAGCCCGCC CACCTGGTTT GCGCCGTGCC GGTCGCGCCC 
GCGGACACGG TCGAGAAGAT CCGCGCCTAC GCCGACGAGG TGGTCTGCCT TTCGACGCCC 
GAATTCTTCC GGGCCGTAGG GCAGTTCTAC GCGGATTTTC CACAGGTCGA CGACGAGGAG 
GTCATCGAAA TCCTGCGTGA GGCCGGCGCA CACCGGGCCG CCTAG
 
Protein sequence
MLFANRHQAA ERLAHALAAY KGKNPLILAI PRGAVPMGQT LAQELRGELD VVLVRKLRAP 
FNPEFALGSI DESGWAYVAD HAESAGGTAA YLEQEKQAQL ATIRARRAQY TPLRAPIDPA 
GRIVIVVDDG LATGATMISA LHALRARKPA HLVCAVPVAP ADTVEKIRAY ADEVVCLSTP 
EFFRAVGQFY ADFPQVDDEE VIEILREAGA HRAA