| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1416 |
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| Symbol | |
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| ID | 3673478 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 1503810 |
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| End bp | 1505219 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637710101 |
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| Product | RND efflux system outer membrane lipoprotein NodT |
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| Protein accession | YP_315174 |
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| Protein GI | 74317434 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCGCC TTCCCAGCCT GAGCGTGACG CTCGCCGCAG CGTTCTTGAG CGCGTGCAGC
ATGATGCCGC GCTACGAGCG GCCCGCCGCG CCCGTCCCGG ACGCCTTCCC CGGTTCTGCG
CTGGCGAGCC CGGCGACCGC CGACGCACCG CCTGCGGACG CGATCGCTTG GCGCGACTAC
TTCGCCGACC CGCACCTGCG CGAGGTGATC GCACTCGCGC TCGCCAACAA CCGCGACCTG
CGCGTCGCGG CGCTCAACAT CGAGCGCGCC CGTGCGCAGT ACCGGATCCA GCGCGCCGAT
CTGTTTCCCG CAGTCAGTGC CGACGGCAGC GAAGTCGCGC AACGCTTGCC GCGCACGCTC
AGCACGACCG GCGACGCCAC GGTGGTGCGC CAGTACAGCG CGACGATTGG TTTTTCGGCT
TACGAGCTCG ATTTCTTCGG GCGCATCCGC AGCCTCAACG CCGAGGCGCT CGAACGCTAC
CTCGGCACCG AGGAAGCGCG CCGCAGCGCC CAGATCAGCC TCGTCGCCGA AGTCGCCAAC
ACCTGGCTGT TGCTCGGTTT CGACCGCGAA CGCCTCGCGC TCGCGCGCAA CACCTACGAA
ACCCGGCAGA AGTCGCACGA TCTCACGCGC CGCAGCTTCG AGGCCGGCGC GGTCTCGGCG
CTCGACCTCA ACCAGTCGCA GACGCTGCTG CAGACGGCGC GTGCGGACGT GGCGCAGTTC
AGCGCCTTCG TCGCGCAGGA CGCGAACCTG CTCGCGCTGC TCGTCGGCGC GCCGGTTCCC
GACACGCTGC AACCGGCGCG GCTGCCGGAC GGTGTTAGCG CGGTCGCCGA GCTGCCGGCC
GGCGTGCCGT CGGAGGTGCT GGCCCGCCGG CCGGACATCC TGCAGGCCGA ACGTGCGCTG
CGGGCGGCGA ACGCGAGCAT CGGCGCCGCG CGGGCGGCGT TCTTCCCGAG CATCAGTCTG
ACCGCGGAGG CCGGCACGGC AAGCAGCACG CTCGACGGCC TGTTCGAAAG CGGGTCGGGC
ACCTGGCGCT TCATCCCGCA GATCCGCATC CCGATTTTCG AGGCCGGGCG CCTGCGCGCG
AGTCTCGACG TCGCCGAGGT CCAGCGCGAC ATCAACGTCG CGCAGTATGA ACGCGCGATT
CAGGCCGCCT TTCGCGAAGT CGCCGACGCG CTCGCCGAGC GCGCGACGCT CAGCGAGCGT
CTCGACGCGC GGCAAAAGCA GGTCGAGGCG ACGCGCGCGG GCTTCGGCCT GTCCGAGGCG
CGCTACAAGA GCGGCGTCGA CAGCTACCTC GGTCTGCTCG ACGCGCAGCG CAGCCTCTAT
GCGGCCGAGC AGGCGCTGAT CGCCGAGCGG CTCGTCGACG CGACCAATCG CGTGACGCTC
TATCGCACGC TCGGCGGAGG CTGGCGCTGA
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| Protein sequence | MSRLPSLSVT LAAAFLSACS MMPRYERPAA PVPDAFPGSA LASPATADAP PADAIAWRDY
FADPHLREVI ALALANNRDL RVAALNIERA RAQYRIQRAD LFPAVSADGS EVAQRLPRTL
STTGDATVVR QYSATIGFSA YELDFFGRIR SLNAEALERY LGTEEARRSA QISLVAEVAN
TWLLLGFDRE RLALARNTYE TRQKSHDLTR RSFEAGAVSA LDLNQSQTLL QTARADVAQF
SAFVAQDANL LALLVGAPVP DTLQPARLPD GVSAVAELPA GVPSEVLARR PDILQAERAL
RAANASIGAA RAAFFPSISL TAEAGTASST LDGLFESGSG TWRFIPQIRI PIFEAGRLRA
SLDVAEVQRD INVAQYERAI QAAFREVADA LAERATLSER LDARQKQVEA TRAGFGLSEA
RYKSGVDSYL GLLDAQRSLY AAEQALIAER LVDATNRVTL YRTLGGGWR
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