| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1295 |
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| Symbol | |
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| ID | 3673385 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 1366935 |
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| End bp | 1368635 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637709980 |
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| Product | type II secretion system protein |
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| Protein accession | YP_315053 |
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| Protein GI | 74317313 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00227246 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATCG CGCAACAGGT TGCGGCCGAC ACCGCGTTTC CGATCAGTGC CGGGCAGTTC
GGCGCGGCGC GTGCCGAGGC GGCGCGCAGC GGGCGCCCGC TGCTGAACGT GCTCGACGAA
CAGCTCGGCC TGCCGGCGCA GGACTTCGTG CGCCGCCTCG CGCATACCGT GCATTACCCC
GTGCTCGACG CGCACGCGCT GCGTTCGCTC ACGCCGGCCT TCGATCTCGT GCCCTACGCC
GAGGCGTTCG CGCACGACTG TCTGGTGCTG CGCAACGCGG GCGGGCAGCT TTACCTGGTT
CTGGCCGATC CGTTCGCGCC GGACCTCGTT GCCTGGGCCG AAGGCCGGCT CGACCGGCCC
TTTACGCCGG CGCTCGTCGC GGCGGCCGAT CTCGCGGCGC TGCTCGCGCA TCACGAAGAC
CAGCTGCGCG CGATGGACGC GATGGTGCTG TCCGAGACTG CGCCGGACCG CTCGGCGGAG
GAGATCGAGG ACCTCTCGCT CAAGGCGATC AGCGAGGACA GCAGCCCGGT CGTCAAGCTC
GTGCGCTCGA CGCTCTACGA CGCGCTCAAG AGCGGCGCGA GCGACGTCCA CCTGGAAACC
GGCGCGACCG GGCTCGCGAT CAAATACCGG ATCGACGGCG TGCTCAGCGC GGTCGGCAAC
GCAGCCGGGC AGGACACGGC TGAGCAGGTC ATTTCGCGCA TCAAGGTGCT TGCCGAGCTC
GACATCTCCG AGCGGCGCGT GCCGCAGGAC GGCCGCTTCA AGGTCGCGGT GCGCGGACGC
GAAGTCGATT TCCGCGTCTC GATCATGCCG AGCGTGTTCG GCGAGGACGC CGTCCTGCGC
GTGCTCGACA AGCAGACGCT CTCCGACCAG ATGCAGGGCC TGCGGCTCGA CAGCCTCGGC
TTCGACGCCG ACAGCATGGC GATGCTGCGG CGCATGGCGC GCGAACCCTA CGGAATGATC
CTGGTCACCG GCCCGACCGG TTCTGGCAAG ACGACGACGC TTTACGCCGC GCTGTCGGAA
GTGAATACCG GCCTCGACAA GATCATCACG ATCGAGGACC CCGTCGAATA CCACCTGCCC
GGGGTGCTGC AGATCCCGGT CAACGAGAAG AAGGGCCTCA CTTTCGCGCG CGGCCTGCGC
TCGGTGCTGC GGCACGACCC CGACAAGATC ATGGTCGGCG AAATCCGCGA TCCAGAGACC
GCGCAGATCG CGGTTCAGTC CGCGCTGACC GGCCACCTCG TGTTCACGAC CGTGCACGCC
AACAACGTCT TCGACGTGCT CGGCCGCTTC GTCCACATGG GCGTCGACGT ATACAGCTTC
GTCGCGGCGC TGAACGGCAT CTCGGCGCAG CGCCTCGTGC GCCAGATCTG CAGCCACTGC
GCCGAGCTAT ATGTGCCGAG CGCCGAACTG CTCGCCGAGT CGCGGCTCGC CGCCGACGCC
GTCGCCGGGT TCGACTTCCG CATCGGCCGC GGTTGCGAAC ACTGCCGCGG CTCGGGTTAC
CGCGGGCGGA TCGCGATCGC CGAAATTCTC CTGCTCAACG ACGAGCTGCG CGAACTCATT
CTCGAGCGCG CACCGATCCG GCAACTGAAG GAGGCCGCAC GCCGCAACGG CGTGCGCTTC
CTGCGCGATG CCGCGCTCGA ACTCGTGCGC AAAGGGCAGA GCACCTTACA GGAAATCAAT
CGTGTCACTT TTGTCGCCTG A
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| Protein sequence | MSIAQQVAAD TAFPISAGQF GAARAEAARS GRPLLNVLDE QLGLPAQDFV RRLAHTVHYP
VLDAHALRSL TPAFDLVPYA EAFAHDCLVL RNAGGQLYLV LADPFAPDLV AWAEGRLDRP
FTPALVAAAD LAALLAHHED QLRAMDAMVL SETAPDRSAE EIEDLSLKAI SEDSSPVVKL
VRSTLYDALK SGASDVHLET GATGLAIKYR IDGVLSAVGN AAGQDTAEQV ISRIKVLAEL
DISERRVPQD GRFKVAVRGR EVDFRVSIMP SVFGEDAVLR VLDKQTLSDQ MQGLRLDSLG
FDADSMAMLR RMAREPYGMI LVTGPTGSGK TTTLYAALSE VNTGLDKIIT IEDPVEYHLP
GVLQIPVNEK KGLTFARGLR SVLRHDPDKI MVGEIRDPET AQIAVQSALT GHLVFTTVHA
NNVFDVLGRF VHMGVDVYSF VAALNGISAQ RLVRQICSHC AELYVPSAEL LAESRLAADA
VAGFDFRIGR GCEHCRGSGY RGRIAIAEIL LLNDELRELI LERAPIRQLK EAARRNGVRF
LRDAALELVR KGQSTLQEIN RVTFVA
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