| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1265 |
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| Symbol | |
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| ID | 3673355 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 1326515 |
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| End bp | 1328791 |
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| Gene Length | 2277 bp |
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| Protein Length | 758 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637709950 |
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| Product | periplasmic sensor diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_315023 |
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| Protein GI | 74317283 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGTACC GAATCTTGCT GCAGGTGTGG CTGGGCTGCG TCTTCCTGCT TGCTCCGGAG
TCGGACGCGC ACGCCCAGCC GGTCCGCGTC GGCGTTTTCG AAAATCCGCC CATCGTTTCC
GCCGGCCTTG ACGGCATGCC GCGCGGCATC TCGATCGACG TCATTCAACT CGTCGCCCAG
CGCGAAGGCT GGCAGGTCAG CTATGTGAGC TCGCCGGTCG ACGATCTCAT CGGTCGCCTC
GAACGCGGCG AGATCGACGT GCTCGCTGCC ATTGGCTACA GCGAGGAATA CGCGCGCAGA
CTACGCCTGA GCCGCGAGAG CCTGATTGCG AACTGGGCCA TGATTTTCCG GCGCGCCGAC
GTCGCGATCG ATTCCCTCCC GCAACTCAAG CGCCGGCGCG TGGCGCTCGT CCGCGGCAGC
GTGCAGGCGA AGGCCCTGAT CAGGCTGGCG GAGCAGTTCG ACGCGCCGTT CAAGCCGGTC
TATGTCGACG ACTTTCCGGC AGTCGTGCGT GCGCTGCAGG AACGCCGCGC CGACGCCGGC
TCGGTCAATC GGCTGTTCGC GGTCGAGTAC GCGAACCAGC CCGGTGTGGT CGAGACGGCT
ATCGTCTTCA GCCCGGTTTC GGTGCATTAC GCTGCGCCGA GAAGCGCCGA TCCCGCGCTG
CTCGACGCCC TCGACCGTCA TCTCGCGGAA CTCAAGGCCG ACACCGATTC GGTCTATTAC
ACATCGCTCA AGCGCTGGCT TGCCGCCGCG CCGGACGGGC GTCTGCCTCC CTGGTTGCCC
TGGCTGATCG GCGGCGGCGG CGGCGCGCTG CTGCTCGCGC TCGCCTTCGT CGTCCTGCTT
CGCCACAAGG TCGGGCGTCA GACTGGCGAA TTGCAGCGTC GTGCCGACCA GCTCGAACTC
GAGGTCGAAC AGCGCGAGCA GGCGCAGCGC CATCTCAACC GGCTCGCCTA TTTCGATGGC
CTGACGCGGC TGCCCAATCG CGAGGCCTTC CGACTGACCC TGAGCCAGGC GCTGCGCACG
CTGAATGGCA GTGGCGGGCG TCTGGCCCTG CTTTTCGTCG ACGTCGACCG CCTGAAAAAC
GTCAACGACG GCCTTGGCCA CCGTGCCGGC GACATGCTGC TGCAGCAGAT CGCAGGCCGT
CTCCAGTCGG TTTTACGCGG CCACGACCAC CTGAGCCGCT TCGGCGGCGA CGAGTTCGTC
GTCATCGTCT CCGAGATCGT CCGCGACACG GACGCCGAGC GGGTGGCTGG CCGCCTGCTC
GCCGCCCTCG CGGCGCCGGT CGACATCGGC GGCACCCAGG TCTACACCGG CGCGAGCATC
GGCATCGCGC TCTACCCCGA GGACGCCGAG TCGCTCGACG GCCTGCTCAA GCACGCCGAC
ACCGCGATGT ACCAAGCCAA GGAGCAGGGC GGCAATCGCT ATGTCTTCTA TCACGCCCAG
CAGACAGAAC GGGCCGTCGA GCGGCTCACG CTGGATACCC GGCTGCGCCA GGCGCTCGAG
CGCAACGAAC TGGTCCTGCA TTACCAGCCG ATCGTCGAAC TGGCGAGCGG ACGCATCGTC
GGCGGCGAGG CCCTGGTGCG CTGGGAAGAC CCCGAGCGCG GACTGGTCAT GCCGTCGGCC
TTCATTCCGG CTGCCGAAGA CACGGGCTTG ATCGTGGCAC TCAGCGACTG GGTACTCGAG
GCCTGCTGCA CCCAGCTGCG CGCGTGGCAG CAGCAGGGCC GGGCGGCGGA CGATCTGACG
CTCTCGGTCA ACATCTCGAC GCGCCAGTTC GAGGGCGAGC ATCTGACCCG CGCGGTCGAC
CGGGCGCTCG CGCGCAGCGG CCTGCGTCCG GACTGCCTCG AACTCGAGAT CACCGAGAAC
GTCATGCTCG TCATGACCGA CGAAGTCCGC ACTTGTCTGG ACGCGCTGCG TGCACGCGGC
GTGCGGCTCG CGCTCGACGA TTTCGGCACG GGCTATTCGA GCCTGAGCTA TCTGAGCCAG
TTGCCTTTTC ACGGACTGAA AATCGACCAG TCCTTCGTGC GCAAGATCCC AGCGCACCCG
AGCGAGACGC AGATCGTCAC GACGATACTG GCGCTCGCCA GGGGGCTGGG GATGGAGGTC
GTCGCCGAGG GCATCGAAAC GGCCCAGCAG TACGCCTTCC TGCGCGATCG CGGCTGCGAG
TTCGGACAGG GAAACCTCAT GAGTACCCCG CAGGCGGCGG ACGCGTTCGC GTCCCTGCTC
GACCGGCAAA AGGCCAGCGG CCAGCGCCCG GTGCACGGGC ACGAAACGGC CCCTTGA
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| Protein sequence | MVYRILLQVW LGCVFLLAPE SDAHAQPVRV GVFENPPIVS AGLDGMPRGI SIDVIQLVAQ
REGWQVSYVS SPVDDLIGRL ERGEIDVLAA IGYSEEYARR LRLSRESLIA NWAMIFRRAD
VAIDSLPQLK RRRVALVRGS VQAKALIRLA EQFDAPFKPV YVDDFPAVVR ALQERRADAG
SVNRLFAVEY ANQPGVVETA IVFSPVSVHY AAPRSADPAL LDALDRHLAE LKADTDSVYY
TSLKRWLAAA PDGRLPPWLP WLIGGGGGAL LLALAFVVLL RHKVGRQTGE LQRRADQLEL
EVEQREQAQR HLNRLAYFDG LTRLPNREAF RLTLSQALRT LNGSGGRLAL LFVDVDRLKN
VNDGLGHRAG DMLLQQIAGR LQSVLRGHDH LSRFGGDEFV VIVSEIVRDT DAERVAGRLL
AALAAPVDIG GTQVYTGASI GIALYPEDAE SLDGLLKHAD TAMYQAKEQG GNRYVFYHAQ
QTERAVERLT LDTRLRQALE RNELVLHYQP IVELASGRIV GGEALVRWED PERGLVMPSA
FIPAAEDTGL IVALSDWVLE ACCTQLRAWQ QQGRAADDLT LSVNISTRQF EGEHLTRAVD
RALARSGLRP DCLELEITEN VMLVMTDEVR TCLDALRARG VRLALDDFGT GYSSLSYLSQ
LPFHGLKIDQ SFVRKIPAHP SETQIVTTIL ALARGLGMEV VAEGIETAQQ YAFLRDRGCE
FGQGNLMSTP QAADAFASLL DRQKASGQRP VHGHETAP
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