| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1258 |
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| Symbol | |
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| ID | 3673348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 1320068 |
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| End bp | 1320958 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637709943 |
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| Product | ribosomal large subunit pseudouridine synthase B |
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| Protein accession | YP_315016 |
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| Protein GI | 74317276 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.919604 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCGAC CCGCATCCCC CATCCGCCGC TCGCCTAACG CTCCCCAGGG GCGCGCGGCG
AGCCGCCTGC AACAGGCGAC CGCGCCCGAG GCTGCGAGCG AGCGTCTGCA CAAGGCGCTC
GCCTCAGCCG GGCTCGGCTC GCGCCGCGAG ATGGAGGAGT GGATCGCCGA AGGGCGCGTG
CAGGTCAATG GCGAGACGGC GACCGTCGGC AGCAAGGTCG GTCCGCGCGA CGTCGTCAAG
GTCAGCGGCC GTCGCGTCTA TCTGCGCTTC GACGAAAAAC GCACGCGCAT CCTGATCTAT
CACAAGTCCG AAGGGGAAAT CGTCAGTCGC GACGACCCCG GCGGCCGCGC GACCGTGTTC
GACGCCTTGC CCAGGTTGCG CGGGTCGAAG TGGATCGCGG TCGGCCGGCT CGACTACAAC
ACCGACGGTC TCATGATCTT CACGACCTCG GGCGATCTCG CCAATCGGCT CATGCATCCG
CGCTTCGAGG TCGAACGCGA ATACGCGGTG CGCGTGCTCG GCGAACTGAC CGAGGACATG
ATCGCCGAGC TGCTGGCAGG GGTCGAACTC GACGACGGCC CGGCGCAGTT GCAGAGCTGT
TTCGCCGCCG GGGGCGAGGG CGCCAACCGC TGGTATCGCG TCGTCATCAA GGAAGGCCGC
AAGCGTGAGG TGCGGCGCCT GTTCGAGCAC TTGGGGCTGA CGGTCTCGCG GCTGACGCGT
ATCCGCTTCG GCCCGATCGT GTTGCCGCCG CAACTGCGGC GCGGCCAGAA GACCGAACTC
GACGACGACC TCGTCGCGCA GGTCATGCGC TGGGCCGGAA TGGAAGCGAG CCCGCGCCGC
AAGACGCGCG GCGTCCCCGA CAAGCACACG CGCAAGCCGC GCATCCGCTG A
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| Protein sequence | MARPASPIRR SPNAPQGRAA SRLQQATAPE AASERLHKAL ASAGLGSRRE MEEWIAEGRV
QVNGETATVG SKVGPRDVVK VSGRRVYLRF DEKRTRILIY HKSEGEIVSR DDPGGRATVF
DALPRLRGSK WIAVGRLDYN TDGLMIFTTS GDLANRLMHP RFEVEREYAV RVLGELTEDM
IAELLAGVEL DDGPAQLQSC FAAGGEGANR WYRVVIKEGR KREVRRLFEH LGLTVSRLTR
IRFGPIVLPP QLRRGQKTEL DDDLVAQVMR WAGMEASPRR KTRGVPDKHT RKPRIR
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