Gene Tbd_0997 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_0997 
Symbol 
ID3671220 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp1064266 
End bp1066197 
Gene Length1932 bp 
Protein Length643 aa 
Translation table11 
GC content68% 
IMG OID637709678 
Producthelicase c2 
Protein accessionYP_314755 
Protein GI74317015 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG1199] Rad3-related DNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.179863 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGATC TGACCCACTT TTTTTCTCCG GAAGGCGCCT GCGCGGCGGT TCTCCCGGGG 
TGGCGCGCGC GCCCGCAGCA GCTCGCCATG GCCGAGGCGG TCGAGCGCGC GATCGCCGGC
AATCTGACCT TGCTCGCCGA GGCCGGGACC GGCACGGGAA AGACGCTCGC CTACCTCATC
CCCGCCCTGC GCTCGGGCGG CAAGGTAGTG ATCTCGACCG GTACCAAGGC GCTGCAGGAT
CAGCTCTTCC ATCGCGATCT GCCGGCCGCG CGCCGCGCGC TGAAGTCGCC GGTCAAGGTG
GCACTGCTCA AGGGGCGTGC CAATTACGTC TGCCACCATC ATCTGCAGCG CAACCTGGCG
GACGGCCGTT TTGCCCACCG CGACGACGCC GCGTGGTTGC AGAAGATCGC ACGCTTCGCC
GAGGCGAGCG CCAGCGGCGA CCGGGCCGAG GCCGAGGGCA TTCCCGAGGA CGCGACGGCC
TGGCAATACG CCGTGTCGAC TCGCGACACC TGCCTCGGCA GCGAGTGCGC ACACTTCAAG
GACTGTTTCG TCATGGCGGC GCGCAAGGCC GCGCTCGACG CCGAGGTCGT CGTGGTCAAC
CACCACTTGT TCTTTGCCGA CCTCTGGCTC AAGGACGAAG GCGTCGCCGA ACTGCTGCCG
GCCTGCAACA CGGTGATTCT CGACGAGGCC CATCAGCTCG CCGAAACCGC CGCGCAGTTC
TTCGGCGAAA CGCTGTCGAC GGCCCAGCTG CTCGATCTGG CCGGCGACAC CAAGCGTCTG
GCGGCGGTCA AGGCCGGCGA TTTTCCGGCC CTGCGGCGTG CGGCCGAGGA TCTGGCCAAG
GCCGCGCGCG ATCTGCGTCT CGCCTTGCCG CAAAACCCGC TCAAGTCGAC GCTCGCCGAA
ATTGGGCGCC ACGAAAAATG GCCGGACGCG CTGGCGGGGC TATCGACCGC GCTCGGCGCT
GCGCGCAAGC TGCTCGAAAC CCAGGCCGAG CGCGATGCCG ACCTCAAGAA TTGTCACGAG
CGCGCAGAGG CGCTTGCCGC GACGCTCGAT CGGTGGCGGC GCGACGACGA ACCTGACGCC
CCCCGGGTGC GCTGGCTCGA GACCACGATG AGTTCGCTGC TGCTGCATGC CACGCCGCTT
TCGGTCGGCA GCCTGTTCGG CGCCAAGCTC ACCGAACGTG CGCAGGCGTG GATCCTGACC
TCGGCGACAC TGTCGGTCGG CGGCGACTTC AGCCACCTGA AAACCCGGCT CGGCATCGAG
GAGGCGGAAA CCCTCTGCGT CGACAGCCCC TTCGACTACC CGCGGCAGGG CGTGCTCTAC
GTGCCGCCGA ACCTGCCCGC GCCGAATACG CCGAGCTTCA CCGAGGCGGT CGTCGACGCC
GCGTTGCCGG TGCTCGAAAT CAGCCAGGGG CGCGCCTTCA TTCTGTTCAC GAGCTTGCGC
GCACTGGAAA AGGCGCGCGA ATTGCTCGCT GCCGCGTTCA CGTTCCGCGG CTGGGCGTTT
CCCTTGCTGG TGCAGGGAGA GGCGCCGAAA AACGAACTGC TCGCACGTTT CCAGCAATCC
GGCAACGCCG TCCTGCTCGG CAGCCAGAGC TTCTGGGAGG GCGTCGACAT GCCGGGCGAC
GTGCTCTCTG TCGTCATCAT CGACAAGCTG CCCTTCCAGC CGCCCGACGA TCCCGTCGTC
GCAGCCCGCA TCGCGCATCT CGAGAAAAGC GGCGGCAAGC CCTTCATGGA CTACCAGCTG
CCGCACGCGG CGATCAGCCT CAAGCAGGGG GCGGGGCGGC TGATTCGCAC CGAGACCGAT
CGGGGGGTGC TGATGATTTG TGATACGCGG CTGGCGGAGA AGCCGTACGG GCGCTTGCTG
CTCAATGCGC TGCCGGCGAT GACGCGGACG CGGAAGCTGG AGGTGGTGGA GCGGTTTTTT
TGCGGCGCAT GA
 
Protein sequence
MSDLTHFFSP EGACAAVLPG WRARPQQLAM AEAVERAIAG NLTLLAEAGT GTGKTLAYLI 
PALRSGGKVV ISTGTKALQD QLFHRDLPAA RRALKSPVKV ALLKGRANYV CHHHLQRNLA
DGRFAHRDDA AWLQKIARFA EASASGDRAE AEGIPEDATA WQYAVSTRDT CLGSECAHFK
DCFVMAARKA ALDAEVVVVN HHLFFADLWL KDEGVAELLP ACNTVILDEA HQLAETAAQF
FGETLSTAQL LDLAGDTKRL AAVKAGDFPA LRRAAEDLAK AARDLRLALP QNPLKSTLAE
IGRHEKWPDA LAGLSTALGA ARKLLETQAE RDADLKNCHE RAEALAATLD RWRRDDEPDA
PRVRWLETTM SSLLLHATPL SVGSLFGAKL TERAQAWILT SATLSVGGDF SHLKTRLGIE
EAETLCVDSP FDYPRQGVLY VPPNLPAPNT PSFTEAVVDA ALPVLEISQG RAFILFTSLR
ALEKARELLA AAFTFRGWAF PLLVQGEAPK NELLARFQQS GNAVLLGSQS FWEGVDMPGD
VLSVVIIDKL PFQPPDDPVV AARIAHLEKS GGKPFMDYQL PHAAISLKQG AGRLIRTETD
RGVLMICDTR LAEKPYGRLL LNALPAMTRT RKLEVVERFF CGA