Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_0810 |
Symbol | |
ID | 3673507 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | + |
Start bp | 851682 |
End bp | 852638 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637709488 |
Product | ribosomal large subunit pseudouridine synthase D |
Protein accession | YP_314568 |
Protein GI | 74316828 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.043607 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGATGGACG ATTATAAGGG AAATAGCGGG GGCGACGTCC GCGAGCTCGT CATCCCCGAC GCGCAGGGCG GGCTGCGTCT GGATCAGGCC TTGTCGGCCC TGCTGCCGGA GTTTTCGCGC AACCGCATCC AGAACTGGAT CCGTGCGCGC AAGATCGTCG TCGACGACGC CTGGGGCACG ACCAAGATGA AGGTCAGCGG CGGCGAATCG GTCCGCGTCC AGGTCGAGCC CGACCCGGGC GCGACGCCCG ACGCGCCTGA GGCGATTCCG CTCGACGTCG TCTACGAGGA CTCGATGCTG CTCGTCATCA ACAAGCCGGT GGGCCTCGTC GTCCATCCCG GCAGCGGCAA CCGCGACGGC ACGCTGCTCA ACGCGCTGCT GCACCGCGTG CCGCAGGTCG CCGAATTGCC GCGCGCGGGC ATCGTTCACC GGCTCGACAA GGACACCTCG GGTCTGCTCG TCGTCGCCAA GACGCTGCGT GCCCACACCG ACCTCGTGCG CCAGCTGCAG GCGCGCACCG TCAAGCGCGA ATATCTGGCG CTGGTGTACG GCGAGGTCGA CCGTGGGGGC ACCGTCGACG CGCCACTCGC GCGCGACCCG CACAACCGCA CCAAGCGCAC GGTCCACAGC CTCGGCAAGG AAGCCGTCAC CCATTACGAC GTGGTCGAGC GCTTTCCCGG CATCACGCTC CTGCGCTGCA AGCTCGAGAC CGGCCGCACC CACCAGATCC GCGTGCACAT GCAGCACGTC GGCCACCCGC TGGTCGGCGA CACGGTCTAC AGCGCAAGCC GCCGCAGCCA TCTCAAGATT CCGTTCCCGC GCCAGGCGCT GCATGCCGAG AAACTTGGTC TGATCCATCC CGTGACCGGC GAATTCGTGC ACTGGGAATG CCCGCTGCCG CCCGACTTCG GCTCGCTGCT GCAGGCCTTG CGCGACAACA CCGACTGGGT CAAGTGA
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Protein sequence | MMDDYKGNSG GDVRELVIPD AQGGLRLDQA LSALLPEFSR NRIQNWIRAR KIVVDDAWGT TKMKVSGGES VRVQVEPDPG ATPDAPEAIP LDVVYEDSML LVINKPVGLV VHPGSGNRDG TLLNALLHRV PQVAELPRAG IVHRLDKDTS GLLVVAKTLR AHTDLVRQLQ ARTVKREYLA LVYGEVDRGG TVDAPLARDP HNRTKRTVHS LGKEAVTHYD VVERFPGITL LRCKLETGRT HQIRVHMQHV GHPLVGDTVY SASRRSHLKI PFPRQALHAE KLGLIHPVTG EFVHWECPLP PDFGSLLQAL RDNTDWVK
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